Screening for candidate genes related with histological microstructure, meat quality and carcass characteristic in pig based on RNA-seq data

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참고문헌 (33)

1. Wang Z, "RNA-Seq: a revolutionary tool for transcriptomics", Nat Rev Genet, 10, pp.57~63 (2009)[DOI]
2. Ramaswami G, "Identifying RNA editing sites using RNA sequencing data alone", Nat Methods, 10, pp.128~132 (2013)[DOI]
3. Piskol R, "Reliable identification of genomic variants from RNA-seq data", Am J Hum Genet, 93, pp.641~651 (2013)[DOI]
4. Canovas A, "SNP discovery in the bovine milk transcriptome using RNA-Seq technology", Mamm Genome, 21, pp.592~598 (2010)[DOI]
5. Lopez-Maestre H, "SNP calling from RNA-seq data without a reference genome: identification quantification differential analysis and impact on the protein sequence", Nucleic Acids Res, 44, pp.e148~ (2016)
6. Jung WY, "RNA-Seq approach for genetic improvement of meat quality in pig and evolutionary insight into the substrate specificity of animal carbonyl reductases", PLoS One, 7, pp.e42198~ (2012)[DOI]
7. Lee YH, "Non-synonymous SNP in the ApoR gene associated with pork meat quality", Biosci Biotechnol Biochem, 75, pp.2018~2020 (2011)[DOI]
8. Piorkowska K, "Detection of genetic variants different between Polish Landrace and Pulawska pigs by means of RNA-seq analysis", Anim Genet, 49, pp.215~225 (2018)[DOI]
9. Fischer D, "Identification of reproduction-related gene polymorphisms using whole transcriptome sequencing in the Large White pig population", G3 (Bethesda), 5, pp.1351~1360 (2015)
10. Joo ST, "Control of fresh meat quality through manipulation of muscle fiber characteristics", Meat Sci, 95, pp.828~836 (2013)[DOI]
11. Bereta A, "Histological profile of the longissimus dorsi muscle in Polish Large White and Polish Landrace pigs and its effect on loin parameters and intramuscular fat content (IMF)", Ann Anim Sci, 14, pp.955~966 (2014)[DOI]
12. Shen LY, "Effects of muscle fiber type on glycolytic potential and meat quality traits in different Tibetan pig muscles and their association with glycolysis-related gene expression", Genet Mol Res, 14, pp.14366~14378 (2015)[DOI]
13. Ropka-Molik K, "Transcriptomic gene profiling of porcine muscle tissue depending on histological properties", Anim Sci J, 88, pp.1178~1188 (2017)[DOI]
14. Dobin A, "STAR: ultrafast universal RNA-seq aligner", Bioinformatics, 29, pp.15~21 (2013)[DOI]
15. McKenna A, "The genome analysis toolkit: A MapReduce framework for analyzing next-generation DNA sequencing data", Genome Res, 20, pp.1297~1303 (2010)[DOI]
16. Cingolani P, "A program for annotating and predicting the effects of single nucleotide polymorphisms SnpEff: SNPs in the genome of Drosophila melanogaster strain w1118; iso-2; iso-3", Fly, 6, pp.80~92 (2012)[DOI]
17. [URL]
18. Hu ZL, "Developmental progress and current status of the Animal QTLdb", Nucleic Acids Res, 44, pp.D827~D833 (2016)[DOI]
19. Ropka-Molik K, "Polymorphisms of the membrane-associated ring finger 4 ubiquitin protein ligase gene (MARCH4) and its relationship with porcine production traits", Livest Sci, 178, pp.18~26 (2015)[DOI]
20. Oczkowicz M, "Effect of IGF2 intron3-g. 3072G>A on intramuscular fat (IMF) content in pigs raised in Poland", Livest Sci, 149, pp.301~304 (2012)[DOI]
21. Wojtysiak D, "Effect of g.2728G>A and g.3996 T>C polymorphisms at the leptin gene locus on microstructure and physicochemical properties of longissimus lumborum muscle of Polish Landrace pigs", Folia Biol, 59, pp.77~82 (2011)[DOI]
22. Zak G, "Improving pork quality through genetics and nutrition", Ann Anim Sci, 9, pp.327~339 (2009)
23. Karlsson AH, "Skeletal muscle fibres as factors for pork quality.;Quality of meat and fat in pigs as affected by genetics and nUTRition", pp.47~67 (2000), Wageningen Academic Publishers
24. Wu F, "Effect of skeletal muscle fibers on porcine meat quality at different stages of growth", Genet Mol Res, 14, pp.7873~7882 (2015)[DOI]
25. Nii M, "Quantitative trait loci mapping for meat quality and muscle fiber traits in a Japanese wild boar<TEX>$\times$<", TEX>Large White intercross, 2005, pp.83, 308~315
26. Wimmers K, "QTL for microstructural and biophysical muscle properties and body composition in pigs", BMC Genet, 7, pp.15~ (2006)
27. Estelle J, "A quantitative trait locus genome scan for porcine muscle fiber traits reveals overdominance and epistasis", J Anim Sci, 86, pp.3290~3299 (2008)[DOI]
28. de Koning DJ, "Detection and characterization of quantitative trait loci for meat quality traits in pigs", J Anim Sci, 79, pp.2812~2819 (2001)[DOI]
29. Jiao S, "Feed intake average daily gain feed efficiency and real-time ultrasound traits in Duroc pigs: II. Genomewide association", J Anim Sci, 92, pp.2846~2860 (2014)[DOI]
30. Takayama K, "TACC2 is an androgen-responsive cell cycle regulator promoting androgenmediated and castration-resistant growth of prostate cancer", Mol Endocrinol, 26, pp.748~761 (2012)[DOI]
31. Schiaffino S, "Regulation of skeletal muscle growth by the IGF1-Akt", PKB pathway: insights from genetic models, 2011, pp.1, 4~
32. Kamei Y, "Skeletal muscle FOXO1 (FKHR) transgenic mice have less skeletal muscle mass down-regulated Type I (slow twitch", red muscle) fiber genes and impaired glycemic control, 2004, pp.279, 41114~41123
33. Xu M, "FoxO1: a novel insight into its molecular mechanisms in the regulation of skeletal muscle differentiation and fiber type specification", Oncotarget, 8, pp.10662~10674 (2017)

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