Alterations of mRNA and lncRNA profiles associated with the extracellular matrix and spermatogenesis in goats

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참고문헌 (46)

1. Zhu Z, "Dynamics of the transcriptome during human spermatogenesis : predicting the potential key genes regulating male gametes generation", Sci Rep, 6, pp.19069~ (2016)[DOI]
2. Li C, "Two novel testis-specific long noncoding RNAs produced by 1700121C10Rik are dispensable for male fertility in mice", J Reprod Dev, 66, pp.57~65 (2020)[DOI]
3. Zeng F, "Analysis of differentially abundant proteins related to boar fertility in seminal plasma using iTRAQ-based quantitative proteomics", J Proteomics, 236, pp.104120~ (2021)[DOI]
4. Cole JB, "Invited review : The future of selection decisions and breeding programs : What are we breeding for, and who decides?", J Dairy Sci, 104, pp.5111~5124 (2021)[DOI]
5. Mayerhofer A, "Human testicular peritubular cells, mast cells and testicular inflammation", Andrologia, 50, pp.e13055~ (2018)[DOI]
6. Nosrati R, "The effects of zinc treatment on matrix metalloproteinases : a systematic review", J Trace Elem Med Biol, 56, pp.107~115 (2019)[DOI]
7. Matuszczak E, "Plasma concentration of MMP-1 and MMP-2 in boys with cryptorchidism and its lack of correlation with INSL3 and inhibin B", Scand J Clin Lab Invest, 79, pp.412~418 (2019)[DOI]
8. Wathes D, "Influence of energy balance on the somatotrophic axis and matrix metalloproteinase expression in the endometrium of the postpartum dairy cow", Reproduction(Cambridge, England), 141, pp.269~281 (2011)[DOI]
9. Voit-Ostricki L, "Conformation and domain movement analysis of human matrix metalloproteinase-2 : role of associated Zn2+ and Ca2+ ions", Int J Mol Sci, 20, pp.4194~ (2019)[DOI]
10. Clemmons DR, "Role of IGF-binding proteins in regulating IGF responses to changes in metabolism", J Mol Endocrinol, 61, pp.T139~T169 (2018)[DOI]
11. Batista P, "Long noncoding RNAs : cellular address codes in development and disease", Cell, 152, pp.1298~1307 (2013)[DOI]
12. Zhang C, "LncRNA, a new component of expanding RNA-protein regulatory network important for animal sperm development", Semin Cell Dev Biol, 59, pp.110~117 (2016)[DOI]
13. Liu K, "Advances of long noncoding RNAs-mediated regulation in reproduction", Chin Med J, 131, pp.226~234 (2018)[DOI]
14. Liu Y, "Analyses of long non-coding RNA and mRNA profiling using RNA sequencing in chicken testis with extreme sperm motility", Sci Rep, 7, pp.9055~ (2017)[DOI]
15. Zhang Y, "Long noncoding RNA expression profile changes associated with dietary energy in the sheep testis during sexual maturation", Sci Rep, 7, pp.5180~ (2017)[DOI]
16. Weng B, "Genomewide analysis of long non-coding RNAs and their role in postnatal porcine testis development", Genomics, 109, pp.446~456 (2017)[DOI]
17. Langmead B, "Fast gapped-read alignment with Bowtie 2", Nat Methods, 9, pp.357~359 (2012)[DOI]
18. Kim D, "TopHat2 : accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions", Genome Biol, 14, pp.R36~ (2013)[DOI]
19. Sun L, "Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts", Nucleic Acids Res, 41, pp.e166~ (2013)[DOI]
20. Kong L, "CPC : assess the protein-coding potential of transcripts using sequence features and support vector machine", Nucleic Acids Res, 35, pp.W345~W349 (2007)[DOI]
21. El-Gebali S, "The Pfam protein families database in 2019", Nucleic Acids Res, 47, pp.D427~D432 (2019)[DOI]
22. Wang L, "CPAT : Coding-potential assessment tool using an alignment-free logistic regression model", Nucleic Acids Res, 41, pp.e74~ (2013)[DOI]
23. Trapnell C, "Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation", Nat Biotechnol, 28, pp.511~515 (2010)[DOI]
24. Young M, "Gene ontology analysis for RNA-seq : accounting for selection bias", Genome Biol, 11, pp.R14~ (2010)[DOI]
25. Xie C, "KOBAS 2. 0 : a web server for annotation and identification of enriched pathways and diseases", Nucleic Acids Res, 39, pp.W316~W322 (2011)[DOI]
26. Langfelder P, "WGCNA : an R package for weighted correlation network analysis", BMC Bioinformatics, 9, pp.559~ (2008)[DOI]
27. Livak KJ, "Analysis of relative gene expression data using real-time quantitative PCR and the 2 ΔΔ C T method", Methods, 25, pp.402~408 (2001)[DOI]
28. Veneziano D, "Computational approaches for the analysis of ncRNA through deep sequencing techniques", Front Bioeng Biotechnol, 3, pp.77~ (2015)[DOI]
29. Bao J, "Expression profiling reveals developmentally regulated lncRNA repertoire in the mouse male germline", Biol Reprod, 89, pp.107~ (2013)[DOI]
30. Joshi M, "Long non-coding RNAs (lncRNAs) in spermatogenesis and male infertility", Reprod Biol Endocrinol, 18, pp.103~ (2020)[DOI]
31. Yang H, "Comprehensive analysis of long noncoding RNA and mRNA expression patterns in sheep testicular maturation", Biol Reprod, 99, pp.650~661 (2018)[DOI]
32. Gao Y, "Analysis of long non-coding RNA and mRNA expression profiling in immature and mature bovine(Bos taurus)testes", Front Genet, 10, pp.646~ (2019)[DOI]
33. Bo D, "RNA-Seq implies divergent regulation patterns of lincRNA on spermatogenesis and testis growth in goats", Animals, 11, pp.625~ (2021)[DOI]
34. Bai M, "Histological analysis and identification of spermatogenesis-related genes in 2-, 6-, and 12-month-old sheep testes", Naturwissenschaften, 104, pp.84~ (2017)[DOI]
35. Artur Mayerhofer, "Human testicular peritubular cells: more than meets the eye", REPRODUCTION, 145(5), pp.R107~R116 (2013), Bioscientifica[DOI]
36. Siu MKY, "Extracellular matrix : recent advances on its role in junction dynamics in the seminiferous epithelium during spermatogenesis", Biol Reprod, 71, pp.375~391 (2004)[DOI]
37. Tan KS, "Expression of cytokine and extracellular matrix mRNAs in fetal hepatic stellate cells", Genes Cells, 22, pp.836~844 (2017)[DOI]
38. van Dam S, "Gene co-expression analysis for functional classification and gene-disease predictions", Brief Bioinform, 19, pp.575~592 (2018)[DOI]
39. Huang H, "Characterization of porcine MMP-2 and its association with immune traits", Gene, 435, pp.63~71 (2009)[DOI]
40. Schrade A, "GATA4 regulates blood-testis barrier function and lactate metabolism in mouse sertoli cells", Endocrinology, 157, pp.2416~2431 (2016)[DOI]
41. McMillen P, "Integration of cell-cell and cell-ECM adhesion in vertebrate morphogenesis", Curr Opin Cell Biol, 36, pp.48~53 (2015)[DOI]
42. Safian D, "Igf binding proteins protect undifferentiated spermatogonia in the zebrafish testis against excessive differentiation", Endocrinology, 157, pp.4423~4433 (2016)[DOI]
43. Su YY, "Insulin-like growth factor binding protein-4 exerts antifibrotic activity by reducing levels of connective tissue growth factor and the C-X-C chemokine receptor 4", FASEB bioAdvances, 1, pp.167~179 (2019)[DOI]
44. Yao Q, "LINC01128 regulates the development of osteosarcoma by sponging miR-299-3p to mediate MMP2expression and activating Wnt", β-catenin signalling pathway, 2020, pp.24, 14293~14305
45. Chen H, "CD147 is required for matrix metalloproteinases-2 production and germ cell migration during spermatogenesis", Mol Hum Reprod, 17, pp.405~414 (2011)[DOI]
46. Finkielstain GP, "An extensive genetic program occurring during postnatal growth in multiple tissues", Endocrinology, 150, pp.1791~1800 (2009)[DOI]

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