A whole genomic scan to detect selection signatures between Berkshire and Korean native pig breeds

키워드

참고문헌 (43)

1. Giuffra E, "The origin of the domestic pig: Independent domestication and subsequent introgression", Genetics, 154, pp.1785~1791 (2000)
2. Larson G, "Worldwide phylogeography of wild boar reveals multiple centers of pig domestication", Science, 307, pp.1618~1621 (2005)
3. Yang SL, "Genetic variation and relationships of eighteen Chinese indigenous pig breeds", Genet Sel Evol, 35, pp.657~671 (2003)
4. Kim TH, "Genetic structure of pig breeds from Korea and China using microsatellite loci analysis", J Anim Sci, 83, pp.2255~2263 (2005)
5. Park BY, "Effect of fiber type on postmortem proteolysis in longisimus muscle of Landrace and Korean native black pigs", Meat Sci, 77, pp.482~491 (2007)
6. Porto-Neto LR, "Detection of signatures of selection using Fst", Methods Mol Biol, 1019, pp.423~436 (2013)
7. Ramos AM, "Design of a high density SNP genotyping assay in the pig using SNPs identified and characterized by next generation sequencing technology", PLoS One, 4, pp.e6524~ (2009)
8. I. H. Hwang, "Identification of Muscle Proteins Related to Objective Meat Quality in Korean Native Black Pig", ASIAN-AUSTRALASIAN JOURNAL OF ANIMAL SCIENCES, 17(11), pp.1599~1607 (2004), 아세아·태평양축산학회
9. "Illumina"[URL]
10. Excoffier L, "Arlequin: An integrated software package for population genetics data analysis", Evol Bioinform, 1, pp.47~50 (2011)
11. "SNP and Variation Suite Version 7"[URL]
12. Patterson N, "Population Structure and Eigen analysis", PLoS Genet 2006, pp.e190~ (2006)
13. Beaumont MA, "Evaluating loci for use in the genetic analysis of population structure", Proc R Soc B, 263, pp.1619~1626 (1996)
14. "ORG Data Repository"[URL]
15. "Visualization, and Integrated Discovery (DAVID) tools"[URL]
16. Gabriel SB, "The Structure of Haplotype Blocks in the Human Genome", Science, 296, pp.2225~ (2002)[DOI]
17. Du ZQ, "Association analyses between type 2 diabetes genes and obesity traits in pigs", Obesity, 17(17), pp.323~329 (2009)
18. Stachowiak M, "The pig CART (cocaine- and amphetamine-regulated transcript) gene and association of its microsatellite polymorphism with production traits", J Anim Breed Genet, 126, pp.37~42 (2009)
19. Vicentic A, "The CART system in appetite and drug addiction", J Pharmacol Exp Ther, 320, pp.499~506 (2007)
20. Han SH, "SINE indel polymorphism of AGL gene and association with growth and carcass traits in Landrace x Jeju Black pig F(2) population", Mol Biol Rep, 37, pp.467~471 (2010)
21. Malek M, "A molecular genome scan analysis to identify chromosomal regions influencing economic traits in the pig. II. Meat and muscle composition", Mamm Genome, 12, pp.637~645 (2001)
22. Rask-Andersen M, "The MAP2K5-linked SNP rs2241423 is associated with BMI and obesity in two cohorts of Swedish and Greek children", BMC Med Genet, 13, pp.36~ (2012)[DOI]
23. Carter EJ, "MEK5 and ERK5 are mediators of the pro-myogenic actions of IGF-2", J Cell Sci, 122, pp.3104~3112 (2009)
24. Kim KS, "Polar overdominant inheritance of a DLK1 polymorphism is associated with growth and fatness in pigs", Mamm Genome, 15, pp.555~559 (2003)
25. Wimmers K, "Associations of functional candidate genes derived from gene-expression profiles of prenatal porcine muscle tissue with meat quality and muscle deposition", Anim Genet, 38, pp.474~484 (2007)
26. Huang YZ, "Haplotype distribution in the GLI3 gene and their associations with growth traits in cattle", Gene, 513, pp.141~146 (2013)
27. Butler AA, "A unique metabolic syndrome causes obesity in the melanocortin-3 receptor-deficient mouse", Endocrinology, 141, pp.3518~3521 (2000)
28. Sharma P, "Polymorphisms in uncoupling protein, melanocortin 3 receptor, melanocortin 4 receptor, and proopiomelanocortin genes and association with production traits in a commercial broiler line", Poult Sci, 87, pp.2073~2086 (2008)
29. Luoreng ZM, "Three novel SNPs in the coding region of the Bovine MC3R gene and their aassociations with ggrowth traits", Biochem Genet, 52, pp.116~124 (2014)
30. Liu S, "Oxidative stress and MAPK involved into ATF2 expression in immortalized human urothelial cells treated by arsenic", Arch Toxicol, 87, pp.981~989 (2013)
31. Racapé M, "The involvement of SMILE", TMTC3 in endoplasmic reticulum stress response, 2011, pp.6, e19321~
32. Lim DH, "Methionine sulfoxide reductase B in the endoplasmic reticulum is critical for stress resistance and aging in Drosophila", Biochem Biophys Res Commun, 419, pp.20~269 (2012)
33. Yim D, "Molecular cloning and characterization of pig immunoreceptor DAP10 and NKG2D", Immunogenetics, 53, pp.243~249 (2001)
34. Lanier LL, "DAP10- and DAP12-associated receptors in innate immunity", Immunol Rev, 227, pp.150~160 (2009)
35. Fujii J, "Identification of a mutation in porcine ryanodine receptor associated with malignant hyperthermia", Science, 253, pp.448~451 (1991)
36. Rubin C, "Strong signatures of selection in the domestic pig genome", PNAS 2012, 2012(109), pp.11929~11936 (2012)
37. Kubo T, "Over expression of HMGA2- LPP fusion transcripts promotes expression of the alpha 2 type XI collagen gene", Biochem Biophys Res Commun, 340, pp.476~481 (2006)
38. Xiang X, "Mini-mouse: disruption of the pygmy locus in a transgenic insertional mutant", Science, 247, pp.967~969 (1990)
39. Boyko AR, "A simple genetic architecture underlies morphological variation in dogs", PLoS Biol, 8, pp.e1000451~ (2010)
40. Smits P, "The transcription factors L-Sox5 and Sox6 are essential for cartilage formation", Dev Cell, 1, pp.277~290 (2001)
41. Delagebeaudeuf C, "Ectopic epididymal expression of guinea pig intestinal phospholipase B. Possible role in sperm maturation and activation by limited proteolytic digestion", J Biol Chem, 273, pp.13407~13414 (1998)
42. Zou Y, "Candidate motors in spermatid maturation in the seminiferous epithelium", Biol Reprod, 66, pp.843~855 (2002)
43. Sasseville M, "New insight into the role of phosphodiesterase 3A in porcine oocyte maturation", BMC Dev Biol, 6, pp.47~ (2006)

관련 논문AI추천