Differences in liver microRNA profiling in pigs with low and high feed efficiency

키워드

참고문헌 (87)

1. Jing L, "Transcriptome analysis of mRNA and miRNA in skeletal muscle indicates an important network for differential Residual Feed Intake in pigs", Sci Rep, 5, pp.11953~ (2015)[DOI]
2. Fu L, "Proteomic analysis indicates that mitochondrial energy metabolism in skeletal muscle tissue is negatively correlated with feed efficiency in pigs", Sci Rep, 7, pp.45291~ (2017)[DOI]
3. Koch RM, "Efficiency of feed use in beef cattle", J Anim Sci, 22, pp.486~494 (1963)[DOI]
4. Kennedy BW, "Genetic and statistical properties of residual feed intake", J Anim Sci, 71, pp.3239~3250 (1993)[DOI]
5. Herd RM, "Physiological basis for residual feed intake", J Anim Sci, 87, pp.E64~E71 (2009)[DOI]
6. Nguyen NH, "Responses in residual feed intake in lines of Large White pigs selected for growth rate on restricted feeding(measured on ad libitum individual feeding)", J Anim Breed Genet, 122, pp.264~270 (2005)[DOI]
7. Hoque MA, "Genetic parameters for measures of the efficiency of gain of boars and the genetic relationships with its component traits in Duroc pigs", J Anim Sci, 85, pp.1873~1879 (2007)[DOI]
8. Do DN, "Genetic parameters for different measures of feed efficiency and related traits in boars of three pig breeds", J Anim Sci, 91, pp.4069~4079 (2013)[DOI]
9. Montagne L, "Physiological response to the weaning in two pig lines divergently selected for residual feed intake", J Anim Physiol Anim Nutr, 2021 (2021)[DOI]
10. Delpuech E, "Identification of genomic regions affecting production traits in pigs divergently selected for feed efficiency", Genet Sel Evol, 53, pp.49~ (2021)[DOI]
11. Faure J, "Consequences of divergent selection for residual feed intake in pigs on muscle energy metabolism and meat quality", Meat Sci, 93, pp.37~45 (2013)[DOI]
12. Le Naou T, "Metabolic changes and tissue responses to selection on residual feed intake in growing pigs", J Anim Sci, 90, pp.4771~4780 (2012)[DOI]
13. Grubbs JK, "Divergent genetic selection for residual feed intake impacts mitochondria reactive oxygen species production in pigs", J Anim Sci, 91, pp.2133~2140 (2013)[DOI]
14. Bartel DP, "MicroRNAs : genomics, biogenesis, mechanism, and function", Cell, 116, pp.281~297 (2004)[DOI]
15. Carrington JC, "Role of microRNAs in plant and animal development", Science, 301, pp.336~338 (2003)[DOI]
16. Wijdan Al-Husseini, "Characterization and Profiling of Liver microRNAs by RNA-sequencing in Cattle Divergently Selected for Residual Feed Intake", Animal Bioscience, 29(10), pp.1371~1382 (2016), 아세아·태평양축산학회[DOI]
17. De Oliveira PSN, "An integrative transcriptome analysis indicates regulatory mRNA-miRNA networks for residual feed intake in Nelore cattle", Sci Rep, 8, pp.17072~ (2018)[DOI]
18. Carvalho EB, "Differentially expressed mRNAs, proteins and miRNAs associated to energy metabolism in skeletal muscle of beef cattle identified for low and high residual feed intake", BMC Genomics, 20, pp.501~ (2019)[DOI]
19. Rui L, "Energy metabolism in the liver", Compr Physiol, 4, pp.177~197 (2014)[DOI]
20. Shimizu N, "A muscle-liver-fat signalling axis is essential for central control of adaptive adipose remodelling", Nat Commun, 6, pp.6693~ (2015)[DOI]
21. Young JM, "Effect of selection for residual feed intake on feeding behavior and daily feed intake patterns in Yorkshire swine", J Anim Sci, 89, pp.639~647 (2011)[DOI]
22. Barea R, "Energy utilization in pigs selected for high and low residual feed intake", J Anim Sci, 88, pp.2062~2072 (2010)[DOI]
23. Gilbert H, "Review : divergent selection for residual feed intake in the growing pig", Animal, 11, pp.1427~1439 (2017)[DOI]
24. Mackowiak SD, "Identification of novel and known miRNAs in deep-sequencing data with miRDeep2", Curr Protoc Bioinform, 36, pp.12.10.1~12.10.15 (2011)[DOI]
25. Fahlgren N, "Computational and analytical framework for small RNA profiling by high-throughput sequencing", RNA, 15, pp.992~1002 (2009)[DOI]
26. Hong L, "Differential microRNA expression in porcine endometrium involved in remodeling and angiogenesis that contributes to embryonic implantation", Front Genet, 10, pp.661~ (2019)[DOI]
27. Wagner GP, "Measurement of mRNA abundance using RNA-seq data : RPKM measure is inconsistent among samples", Theory Biosci, 131, pp.281~285 (2012)[DOI]
28. Friedländer MR, "miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades", Nucleic Acids Res, 40, pp.37~52 (2012)[DOI]
29. Lorenz R, "ViennaRNA Package 2. 0", Algorithms Mol Biol, 6, pp.26~ (2011)[DOI]
30. Love MI, "Moderated estimation of fold change and dispersion for RNAseq data with DESeq2", Genome Biol, 15, pp.550~ (2014)[DOI]
31. Audic S, "The significance of digital gene expression profiles", Genome Res, 7, pp.986~995 (1997)[DOI]
32. Zhao Y, "Transcriptome analysis reveals that vitamin A metabolism in the liver affects feed efficiency in pigs", G3(Bethesda), 6, pp.3615~3624 (2016)[DOI]
33. Shannon P, "Cytoscape : a software environment for integrated models of biomolecular interaction networks", Genome Res, 13, pp.2498~2504 (2003)[DOI]
34. Dekkers JCM, "Genetic and biological aspect of residual feed intake in pigs. 9", World Congress on Genetics Applied to Livestock Production (2010)
35. Hermesch S, "Genetic improvement of lean meat growth and feed efficiency in pigs", Aust J Exp Agric, 44, pp.1~9 (2004)[DOI]
36. van Milgen J, "Partitioning of energy intake to heat, protein, and fat in growing pigs", J Anim Sci, 81, pp.E86~93 (2003)[DOI]
37. Rajewsky N, "microRNA target predictions in animals", Nat Genet, 38, pp.S8~13 (2006)[DOI]
38. Lkhagvadorj S, "Gene expression profiling of the short-term adaptive response to acute caloric restriction in liver and adipose tissues of pigs differing in feed efficiency", Am J Physiol Regul Integr Comp Physiol, 298, pp.R494~507 (2010)[DOI]
39. Chen Y, "Global gene expression profiling reveals genes expressed differentially in cattle with high and low residual feed intake", Anim Genet, 42, pp.475~490 (2011)[DOI]
40. Ramayo-Caldas Y, "Integrative approach using liver and duodenum RNA-Seq data identifies candidate genes and pathways associated with feed efficiency in pigs", Sci Rep, 8, pp.558~ (2018)[DOI]
41. Horodyska J, "RNA-Seq of liver from pigs divergent in feed efficiency highlights shifts in macronutrient metabolism, hepatic growth and immune response", Front Genet, 10, pp.117~ (2019)[DOI]
42. Tizioto PC, "Gene expression differences in Longissimus muscle of Nelore steers genetically divergent for residual feed intake", Sci Rep, 6, pp.39493~ (2016)[DOI]
43. Fatima A, "The miRNAome of the postpartum dairy cow liver in negative energy balance", BMC Genomics, 15, pp.279~ (2014)[DOI]
44. Castaño C, "Obesity-associated exosomal miRNAs modulate glucose and lipid metabolism in mice", Proc Natl Acad Sci USA, 115, pp.12158~12163 (2018)[DOI]
45. Pirola CJ, "Circulating microRNA signature in non-alcoholic fatty liver disease : from serum non-coding RNAs to liver histology and disease pathogenesis", Gut, 64, pp.800~812 (2015)[DOI]
46. Aryal B, "MicroRNAs and lipid metabolism", Curr Opin Lipidol, 28, pp.273~280 (2017)[DOI]
47. Heo MJ, "Alcohol dysregulates miR-148a in hepatocytes through FoxO1, facilitating pyroptosis via TXNIP overexpression", Gut, 68, pp.708~720 (2019)[DOI]
48. Esau C, "miR-122 regulation of lipid metabolism revealed by in vivo antisense targeting", Cell Metab, 3, pp.87~98 (2006)[DOI]
49. Reddy AM, "Cloning, characterization and expression analysis of porcine microRNAs", BMC Genomics, 10, pp.65~ (2009)[DOI]
50. Andersson P, "Plasma levels of liver-specific miR-122 is massively increased in a porcine cardiogenic shock model and attenuated by hypothermia", Shock, 37, pp.234~238 (2012)[DOI]
51. Tang Z, "Genome-wide association study reveals candidate genes for growth relevant traits in pigs", Front Genet, 10, pp.302~ (2019)[DOI]
52. Lin Y, "Downregulation of miR-192 causes hepatic steatosis and lipid accumulation by inducing SREBF1 : novel mechanism for bisphenol A-triggered non-alcoholic fatty liver disease", Biochim Biophys Acta Mol Cell Biol Lipids, 1862, pp.869~882 (2017)[DOI]
53. Iguchi T, "Circulating liver-specific microRNAs in cynomolgus monkeys", J Toxicol Pathol, 31, pp.3~13 (2018)[DOI]
54. Dong P, "MiR-15a", b promote adipogenesis in porcine pre-adipocyte via repressing FoxO1, 2014, pp.46, 565~571
55. Ponsuksili S, "Genetic architecture and regulatory impact on hepatic microRNA expression linked to immune and metabolic traits", Open Biol, 7, pp.170101~ (2017)[DOI]
56. Chen Z, "miR-30e-5p and miR-15a synergistically regulate fatty acid metabolism in goat mammary epithelial cells via LRP6 and YAP1", Int J Mol Sci, 17, pp.1909~ (2016)[DOI]
57. Zhao Y, "Transcriptome analysis reveals that vitamin A metabolism in the liver affects feed efficiency in pigs", G3(Bethesda), 6, pp.3615~3624 (2016)[DOI]
58. Liao X, "LAMP3 regulates hepatic lipid metabolism through activating PI3K", Akt pathway, 2018, pp.470, 160~167
59. Romao JM, "MicroRNAs in bovine adipogenesis : genomic context, expression and function", BMC Genomics, 15, pp.137~ (2014)[DOI]
60. Wei X, "STAT5a promotes the transcription of mature mmu-miR-135a in 3T3-L1 cells by binding to both miR-135a-1 and miR-135a-2promoter elements", Int J Biochem Cell Biol, 77, pp.109~119 (2016)[DOI]
61. Chen C, "miR-135a-5p inhibits 3T3-L1 adipogenesis through activation of canonical Wnt", β-catenin signaling, 2014, pp.52, 311~320
62. Zhang F, "Phenotypic and genetic relationships of residual feed intake measures and their component traits with fatty acid composition in subcutaneous adipose of beef cattle", J Anim Sci, 95, pp.2813~2824 (2017)[DOI]
63. Crespo-Piazuelo D, "Identification of strong candidate genes for backfat and intramuscular fatty acid composition in three crosses based on the Iberian pig", Sci Rep, 10, pp.13962~ (2020)[DOI]
64. Xu Y, "Transcriptome analysis of adipose tissue indicates that the cAMP signaling pathway affects the feed efficiency of pigs", Genes, 9, pp.336~ (2018)[DOI]
65. Zhang J, "Landscape of loci and candidate genes for muscle fatty acid composition in pigs revealed by multiple population association analysis", Front Genet, 10, pp.1067~ (2019)[DOI]
66. Yang WC, "Bta-miR-130a regulates the biosynthesis of bovine milk fat by targeting peroxisome proliferator-activated receptor gamma", J Anim Sci, 95, pp.2898~2906 (2017)[DOI]
67. Liu J, "LncRNA-H19 promotes hepatic lipogenesis by directly regulating miR-130a", PPARγ axis in non-alcoholic fatty liver disease, 2019, pp.39, 20181722~
68. Ng R, "Inhibition of microRNA-24expression in liver prevents hepatic lipid accumulation and hyperlipidemia", Hepatology, 60, pp.554~564 (2014)[DOI]
69. Wei LM, "MiR-125b-2 knockout increases highfat diet-induced fat accumulation and insulin resistance", Sci Rep, 10, pp.21969~ (2020)[DOI]
70. Zhang ZC, "Upregulation of miR-125b by estrogen protects against non-alcoholic fatty liver in female mice", J Hepatol, 63, pp.1466~1475 (2015)[DOI]
71. Wang XC, "MicroRNA-185 regulates expression of lipid metabolism genes and improves insulin sensitivity in mice with non-alcoholic fatty liver disease", World J Gastroenterol, 20, pp.17914~17923 (2014)[DOI]
72. Ali O, "miR-26a potentially contributes to the regulation of fatty acid and sterol metabolism in vitro human HepG2 cell model of nonalcoholic fatty liver disease", Oxid Med Cell Longev, 2018, pp.8515343~ (2018)[DOI]
73. Li Y, "Association of single nucleotide polymorphisms of miRNAs involved in the GLUT4 pathway in T2DM in a Chinese population", Mol Genet Genomic Med, 7, pp.e907~ (2019)[DOI]
74. Agarwal P, "miR-135a targets IRS2 and regulates insulin signaling and glucose uptake in the diabetic gastrocnemius skeletal muscle", Biochim Biophys Acta Mol Basis Dis, 1832, pp.1294~1303 (2013)[DOI]
75. Guo Y, "MicroRNA-15a inhibits glucose transporter 4 translocation and impairs glucose metabolism in L6 skeletal muscle via targeting of vesicleassociated membrane protein-associated protein A", Can J Diabetes, 44, pp.261~266 (2020)[DOI]
76. Liang J, "MicroRNA-29a-c decrease fasting blood glucose levels by negatively regulating hepatic gluconeogenesis", J Hepatol, 58, pp.535~542 (2013)[DOI]
77. Bagge A, "MicroRNA-29a is up-regulated in beta-cells by glucose and decreases glucose-stimulated insulin secretion", Biochem Biophys Res Commun, 426, pp.266~272 (2012)[DOI]
78. Kim S, "microRNA-155 positively regulates glucose metabolism via PIK3R1-FOXO3a-cMYC axis in breast cancer", Oncogene, 37, pp.2982~2991 (2018)[DOI]
79. Fu X, "MicroRNA-26a regulates insulin sensitivity and metabolism of glucose and lipids", J Clin Invest, 125, pp.2497~2509 (2015)[DOI]
80. Bao L, "MicroRNA-185 targets SOCS3 to inhibit beta-cell dysfunction in diabetes", PLOS ONE, 10, pp.e0116067~ (2015)[DOI]
81. Zhang G, "MicroRNA-125b reduces glucose uptake in papillary thyroid carcinoma cells", Oncol Lett, 20, pp.2806~2810 (2020)[DOI]
82. Du X, "Hepatic miR-125b inhibits insulin signaling pathway by targeting PIK3CD", J Cell Physiol, 233, pp.6052~6066 (2018)[DOI]
83. Tili E, "The down-regulation of miR-125b in chronic lymphocytic leukemias leads to metabolic adaptation of cells to a transformed state", Blood, 120, pp.2631~2638 (2012)[DOI]
84. Anzenbacher P, "Cytochromes P450 and metabolism of xenobiotics", Cell Mol Life Sci, 58, pp.737~747 (2001)[DOI]
85. Gibbons GF, "The role of cytochrome P450 in the regulation of cholesterol biosynthesis", Lipids, 37, pp.1163~1170 (2002)[DOI]
86. Sauer J, "Physiological concentrations of butyrate favorably modulate genes of oxidative and metabolic stress in primary human colon cells", J Nutr Biochem, 18, pp.736~745 (2007)[DOI]
87. Percie du Sert N, "Reporting animal research: explanation and elaboration for the ARRIVE guidelines 2.0", PLOS Biol, 18, pp.e3000411~ (2020)[DOI]

관련 논문AI추천