Identification of long non-coding RNA-mRNA interactions and genome-wide lncRNA annotation in animal transcriptome profiling

키워드

참고문헌 (175)

1. Kim K, "Expectations, validity, and reality in gene expression profiling", J Clin Epidemiol, 63, pp.950~959 (2010)[DOI]
2. Patil VS, "Gene regulation by non-coding RNAs", Crit Rev Biochem Mol Biol, 49, pp.16~32 (2014)[DOI]
3. Zhang X, "Mechanisms and functions of long non-coding RNAs at multiple regulatory levels", Int J Mol Sci, 20, pp.5573~ (2019)[DOI]
4. Statello L, "Gene regulation by long non-coding RNAs and its biological functions", Nat Rev Mol Cell Biol, 22, pp.96~118 (2021)[DOI]
5. Im JH, "New evidence of lncRNA role in tumor progression and metastasis", Hepatobiliary Surg Nutr, 1, pp.55~56 (2012)[DOI]
6. Wang W, "Biological function of long non-coding RNA(lncRNA)Xist", Front Cell Dev Biol, 9, pp.645647~ (2021)[DOI]
7. Chen L, "Transcriptome analysis suggests the roles of long intergenic non-coding RNAs in the growth performance of weaned piglets", Front Genet, 10, pp.196~ (2019)[DOI]
8. Jia L, "Progress in expression pattern and molecular regulation mechanism of lncRNA in bovine mastitis", Animals, 12, pp.1059~ (2022)[DOI]
9. Adetula AA, "Transcriptome sequencing reveals key potential long non-coding RNAs related to duration of fertility trait in the uterovaginal junction of egg-laying hens", Sci Rep, 8, pp.13185~ (2018)[DOI]
10. Joyce GF, "The antiquity of RNA-based evolution", Nature, 418, pp.214~221 (2002)[DOI]
11. Arraiano CM, "The critical role of RNA processing and degradation in the control of gene expression", FEMS Microbiol Rev, 34, pp.883~923 (2010)[DOI]
12. Seetin MG, "Bacterial regulatory RNA", pp.99~122 (2012), Humana Press
13. Brandenburger T, "Noncoding RNAs in acute kidney injury", Kidney Int, 94, pp.870~881 (2018)[DOI]
14. Clancy S, "Translation : DNA to mRNA to protein", Nat Educ, 1, pp.101~ (2008)
15. de Sousa Abreu R, "Global signatures of protein and mRNA expression levels", Mol Biosyst, 5, pp.1512~1526 (2009)[DOI]
16. Greenbaum D, "Comparing protein abundance and mRNA expression levels on a genomic scale", Genome Biol, 4, pp.117~ (2003)[DOI]
17. Chen G, "Discordant protein and mRNA expression in lung adenocarcinomas", Mol Cell Proteomics, 1, pp.304~313 (2002)[DOI]
18. Yakubov E, "Reprogramming of human fibroblasts to pluripotent stem cells using mRNA of four transcription factors", Biochem Biophys Res Commun, 394, pp.189~193 (2010)[DOI]
19. Anderson MG, "Expression of VDR and CYP24A1 mRNA in human tumors", Cancer Chemother Pharmacol, 57, pp.234~240 (2006)[DOI]
20. Wang X, "Induced expression of adipophilin mRNA in human macrophages stimulated with oxidized low-density lipoprotein and in atherosclerotic lesions", FEBS Lett, 462, pp.145~150 (1999)[DOI]
21. Dolgin E, "The tangled history of mRNA vaccines", Nature, 597, pp.318~324 (2021)[DOI]
22. Fujii T, "Induction of choline acetyltransferase mRNA in human mononuclear leukocytes stimulated by phytohemagglutinin, a T-cell activator", J Neuroimmunol, 82, pp.101~107 (1998)[DOI]
23. Faustino NA, "Pre-mRNA splicing and human disease", Genes Dev, 17, pp.419~437 (2003)[DOI]
24. Hollams EM, "MRNA stability and the control of gene expression : implications for human disease", Neurochem Res, 27, pp.957~980 (2002)[DOI]
25. Craig Venter J, "The sequence of the human genome", Science, 291, pp.1304~1351 (2001)[DOI]
26. Lee SF, "Differential expression of cannabinoid CB2 receptor mRNA in mouse immune cell subpopulations and following B cell stimulation", Eur J Pharmacol, 423, pp.235~241 (2001)[DOI]
27. Hörtnagl H, "Patterns of mRNA and protein expression for 12 GABAA receptor subunits in the mouse brain", Neuroscience, 236, pp.345~372 (2013)[DOI]
28. Carrillo-Vico A, "Expression of membrane and nuclear melatonin receptor mRNA and protein in the mouse immune system", Cell Mol Life Sci, 60, pp.2272~2278 (2003)[DOI]
29. Morgan ME, "Expression of FOXP3 mRNA is not confined to CD4+CD25+ T regulatory cells in humans", Hum Immunol, 66, pp.13~20 (2005)[DOI]
30. Li Y, "High-fat diet decreases tyrosine hydroxylase mRNA expression irrespective of obesity susceptibility in mice", Brain Res, 1268, pp.181~189 (2009)[DOI]
31. Buzala M, "Review : effects of different growth rates in broiler breeder and layer hens on some productive traits", Poult Sci, 95, pp.2151~2159 (2016)[DOI]
32. Shen H, "Porcine MuRF2 and MuRF3 : molecular cloning, expression and association analysis with muscle production traits", Mol Biol Rep, 38, pp.5115~5123 (2011)[DOI]
33. Juszczuk-Kubiak E, "Study of bovine Mef2B gene : the temporal-spatial expression patterns, polymorphism and association analysis with meat production traits", J Anim Sci, 94, pp.4536~4548 (2016)[DOI]
34. Zeng F, "Complementary deoxyribonucleic acid cloning of avian G0", G1 switch gene 2, and its expression and association with production traits in chicken, 2011, pp.90, 1548~1554
35. Szreder T, "Estrogen receptors and their genes—potential markers of functional and production traits of farm animals", Mol Biol Rep, 34, pp.207~211 (2007)[DOI]
36. Bai Y, "Polymorphisms of the proopiomelanocortin and agouti-related protein genes and their association with chicken production traits", Mol Biol Rep, 39, pp.7533~7539 (2012)[DOI]
37. Cochran SD, "Discovery of single nucleotide polymorphisms in candidate genes associated with fertility and production traits in Holstein cattle", BMC Genet, 14, pp.49~ (2013)[DOI]
38. Liu LX, "Myostatin mRNA expression and its association with body weight and carcass traits in Yunnan Wuding chicken", Genet Mol Res, 15, pp.1~12 (2016)[DOI]
39. Ramayo-Caldas Y, "Integrative approach using liver and duodenum RNA-Seq data identifies candidate genes and pathways associated with feed efficiency in pigs", Sci Rep, 8, pp.558~ (2018)[DOI]
40. Lee EA, "Effects of variation in porcine MYOD1 gene on muscle fiber characteristics, lean meat production, and meat quality traits", Meat Sci, 92, pp.36~43 (2012)[DOI]
41. Çinar MU, "eQTL analysis and association of MYF6mRNA expression with meat quality traits in pigs", Kafkas Univ Vet Fak Derg, 18, pp.235~242 (2012)[DOI]
42. Nkrumah JD, "Association of a single nucleotide polymorphism in the bovine leptin gene with feed intake, feed efficiency, growth, feeding behaviour, carcass quality and body composition", Can J Anim Sci, 84, pp.211~219 (2004)[DOI]
43. Li X, "Investigation of porcine FABP3and LEPR gene polymorphisms and mRNA expression for variation in intramuscular fat content", Mol Biol Rep, 37, pp.3931~3939 (2010)[DOI]
44. Seo YJ, "Regulation of swine growth by backfat tissue during growing and finishing stages", Animals, 11, pp.3511~ (2021)[DOI]
45. Raliou M, "Subclinical endometritis in dairy cattle is associated with distinct mRNA expression patterns in blood and endometrium", PLOS ONE, 14, pp.e0220244~ (2019)[DOI]
46. Weikard R, "Tissue-specific mRNA expression patterns reveal a coordinated metabolic response associated with genetic selection for milk production in cows", Physiol Genomics, 44, pp.728~739 (2012)[DOI]
47. Szewczuk M, "Association between IGF1R", i16, SnaBI polymorphisms and milk production traits in Polish HolsteinFriesian cows, pp.Anim Sci Pap Rep, 2012[DOI]
48. Yang SH, "Validation of PDE9A gene identified in GWAS showing strong association with milk production traits in Chinese Holstein", Int J Mol Sci, 16, pp.26530~26542 (2015)[DOI]
49. Guo S, "Associations of CALM1 and DRD1polymorphisms, and their expression levels, with Taihang chicken egg-production traits", Anim Biotechnol (2021)[DOI]
50. Yuan Z, "Characterization of chicken MMP13 expression and genetic effect on egg production traits of its promoter polymorphisms", G3, 6, pp.1305~1312 (2016)[DOI]
51. Xu H, "The genetic effects of the dopamine D1 receptor gene on chicken egg production and broodiness traits", BMC Genet, 11, pp.17~ (2010)[DOI]
52. Vonnahme KA, "Effect of early gestational undernutrition on angiogenic factor expression and vascularity in the bovine placentome", J Anim Sci, 85, pp.2464~2472 (2007)[DOI]
53. Wang L, "Effects of dietary supplementation with epidermal growth factor on nutrient digestibility, intestinal development and expression of nutrient transporters in early-weaned piglets", J Anim Physiol Anim Nutr, 103, pp.618~625 (2019)[DOI]
54. Weller MMDCA, "Effects of nutrient intake level on mammary parenchyma growth and gene expression in crossbred(Holstein × Gyr)prepubertal heifers", J Dairy Sci, 99, pp.9962~9973 (2016)[DOI]
55. Rhoads ML, "Effects of heat stress and nutrition on lactating Holstein cows : II. aspects of hepatic growth hormone responsiveness", J Dairy Sci, 93, pp.170~179 (2010)[DOI]
56. Deb R, "Promoter variants at AP2 box region of Hsp70. 1 affect thermal stress response and milk production traits in Frieswal cross bred cattle", Gene, 532, pp.230~235 (2013)[DOI]
57. Uematsu M, "Regulation of endothelial cell nitric oxide synthase mRNA expression by shear stress", Am J Physiol Cell Physiol, 269, pp.C1371~C1378 (1995)[DOI]
58. do Amaral BC, "Heat stress abatement during the dry period influences prolactin signaling in lymphocytes", Domest Anim Endocrinol, 38, pp.38~45 (2010)[DOI]
59. Sejian V, "Review : adaptation of animals to heat stress", Animal, 12, pp.s431~s444 (2018)[DOI]
60. Lim C, "Hepatic transcriptome profiling according to growth rate reveals acclimation in metabolic regulatory mechanisms to cyclic heat stress in broiler chickens", Poult Sci, 101, pp.102167~ (2022)[DOI]
61. Park J, "Glucocorticoids modulate NFκB-dependent gene expression by up-regulating FKBP51 expression in Newcastle disease virus-infected chickens", Mol Cell Endocrinol, 278, pp.7~17 (2007)[DOI]
62. Ishikawa H, "mRNA profile in milk extracellular vesicles from bovine leukemia virus-infected cattle", Viruses, 12, pp.669~ (2020)[DOI]
63. Hoffmann B, "A review of RT-PCR technologies used in veterinary virology and disease control : sensitive and specific diagnosis of five livestock diseases notifiable to the World Organisation for Animal Health", Vet Microbiol, 139, pp.1~23 (2009)[DOI]
64. Lim B, "Integrated time-serial transcriptome networks reveal common innate and tissue-specific adaptive immune responses to PRRSV infection", Vet Res, 51, pp.128~ (2020)[DOI]
65. Fu Y, "Association of EphA4 polymorphism with swine reproductive traits and mRNA expression of EphA4 during embryo implantation", Mol Biol Rep, 39, pp.2689~2696 (2012)[DOI]
66. Liu S, "Genetic effects of PDGFRB and MARCH1identified in GWAS revealing strong associations with semen production traits in Chinese Holstein bulls", BMC Genet, 18, pp.63~ (2017)[DOI]
67. Hui Y, "Goat DNMT3B : an indel mutation detection, association analysis with litter size and mRNA expression in gonads", Theriogenology, 147, pp.108~115 (2020)[DOI]
68. Kwon SG, "Identification of differentially expressed genes associated with litter size in Berkshire pig placenta", PLOS ONE, 11, pp.e0153311~ (2016)[DOI]
69. Fernandez-Rodriguez A, "Differential gene expression in ovaries of pregnant pigs with high and low prolificacy levels and identification of candidate genes for litter size", Biol Reprod, 84, pp.299~307 (2011)[DOI]
70. Chen X, "Differential gene expression in uterine endometrium during implantation in pigs", Biol Reprod, 92, pp.52~ (2015)[DOI]
71. Kim JM, "Integrated transcriptomes throughout swine oestrous cycle reveal dynamic changes in reproductive tissues interacting networks", Sci Rep, 8, pp.5436~ (2018)[DOI]
72. Hüttenhofer A, "Experimental approaches to identify non-coding RNAs", Nucleic Acids Res, 34, pp.635~646 (2006)[DOI]
73. Zhang P, "Non-coding RNAs and their integrated networks", J Integr Bioinform, 16, pp.1~12 (2019)[DOI]
74. Morey C, "Employment opportunities for non-coding RNAs", FEBS Lett, 567, pp.27~34 (2004)[DOI]
75. McClain WH, "Rules that govern tRNA identity in protein synthesis", J Mol Biol, 234, pp.257~280 (1993)[DOI]
76. Weiner AM, "tRNA-like structures tag the 3’ ends of genomic RNA molecules for replication : implications for the origin of protein synthesis", Proc Natl Acad Sci USA, 84, pp.7383~7387 (1987)[DOI]
77. Valadkhan S, "Role of small nuclear RNAs in eukaryotic gene expression", Essays Biochem, 54, pp.79~90 (2013)[DOI]
78. Dieci G, "Eukaryotic snoRNAs : a paradigm for gene expression flexibility", Genomics, 94, pp.83~88 (2009)[DOI]
79. Ghoshal K, "An alternative molecular mechanism of action of 5-fluorouracil, a potent anticancer drug", Biochem Pharmacol, 53, pp.1569~1575 (1997)[DOI]
80. Catalanotto C, "MicroRNA in control of gene expression : an overview of nuclear functions", Int J Mol Sci, 17, pp.1712~ (2016)[DOI]
81. Xu W, "Comprehensive biotechnology Vol. 5", pp.560~575 (2019), Elsevier
82. Lam JKW, "siRNA versus miRNA as therapeutics for gene silencing", Mol Ther Nucleic Acids, 4, pp.E252~ (2015)[DOI]
83. Ozata DM, "PIWI-interacting RNAs : small RNAs with big functions", Nat Rev Genet, 20, pp.89~108 (2019)[DOI]
84. Zheng H, "Benchmark of long non-coding RNA quantification for RNA sequencing of cancer samples", GigaScience, 8, pp.giz145~ (2019)[DOI]
85. St. Laurent G, "The landscape of long noncoding RNA classification", Trends Genet, 31, pp.239~251 (2015)[DOI]
86. Mattick JS, "Non-coding RNA", Hum Mol Genet, 15, pp.R17~29 (2006)[DOI]
87. Quinn JJ, "Unique features of long non-coding RNA biogenesis and function", Nat Rev Genet, 17, pp.47~62 (2016)[DOI]
88. Schlackow M, "Distinctive patterns of transcription and RNA processing for human lincRNAs", Mol Cell, 65, pp.25~38 (2017)[DOI]
89. Guo CJ, "Distinct processing of lncRNAs contributes to non-conserved functions in stem cells", Cell, 181, pp.621~636 (2020)[DOI]
90. Melé M, "Chromatin environment, transcriptional regulation, and splicing distinguish lincRNAs and mRNAs", Genome Res, 27, pp.27~37 (2017)[DOI]
91. Zuckerman B, "Predictive models of subcellular localization of long RNAs", RNA, 25, pp.557~572 (2019)[DOI]
92. Kung JTY, "Long noncoding RNAs : past, present, and future", Genetics, 193, pp.651~669 (2013)[DOI]
93. Wang KC, "Molecular mechanisms of long noncoding RNAs", Mol Cell, 43, pp.904~914 (2011)[DOI]
94. Gong Y, "Integrated analysis of lncRNA and mRNA in subcutaneous adipose tissue of Ningxiang pig", Biology, 10, pp.726~ (2021)[DOI]
95. Song F, "Long noncoding RNA and mRNA expression profiles following igf3 knockdown in common carp, Cyprinus carpio", Sci Data, 6, pp.190024~ (2019)[DOI]
96. Jiang L, "Identification and expression analysis of lncRNA in seven organs of Rhinopithecus roxellana", Funct Integr Genom, 21, pp.543~555 (2021)[DOI]
97. Quinn JJ, "Rapid evolutionary turnover underlies conserved lncRNA–genome interactions", Genes Dev, 30, pp.191~207 (2016)[DOI]
98. Clark MB, "The reality of pervasive transcription", PLOS Biol, 9, pp.e1000625~ (2011)[DOI]
99. Ma L, "On the classification of long non-coding RNAs", RNA Biol, 10, pp.924~933 (2013)[DOI]
100. Suarez B, "LncRNAs in the type I interferon antiviral response", Int J Mol Sci, 21, pp.6447~ (2020)[DOI]
101. Ulitsky I, "lincRNAs : genomics, evolution, and mechanisms", Cell, 154, pp.26~46 (2013)[DOI]
102. Fang Y, "Roles, functions, and mechanisms of long non-coding RNAs in cancer", Genom Proteom Bioinform, 14, pp.42~54 (2016)[DOI]
103. Budak H, "Long non-coding RNA in plants in the era of reference sequences", Front Plant Sci, 11, pp.276~ (2020)[DOI]
104. Ros G, "HMGA2antisense long non-coding RNAs as new players in the regulation of HMGA2 expression and pancreatic cancer promotion", Front Oncol, 9, pp.1526~ (2020)[DOI]
105. Mo S, "Antisense lncRNA LDLRAD4-AS1 promotes metastasis by decreasing the expression of LDLRAD4 and predicts a poor prognosis in colorectal cancer", Cell Death Dis, 11, pp.155~ (2020)[DOI]
106. Grote P, "The tissue-specific lncRNA Fendrr is an essential regulator of heart and body wall development in the mouse", Dev Cell, 24, pp.206~214 (2013)[DOI]
107. Zhang Y, "New insight into long non-coding RNAs associated with bone metastasis of breast cancer based on an integrated analysis", Cancer Cell Int, 21, pp.372~ (2021)[DOI]
108. Jiang P, "Characterization of lncRNAs involved in cold acclimation of zebrafish ZF4 cells", PLOS ONE, 13, pp.e0195468~ (2018)[DOI]
109. Simion V, "A macrophagespecific lncRNA regulates apoptosis and atherosclerosis by tethering HuR in the nucleus", Nat Commun, 11, pp.6135~ (2020)[DOI]
110. Jiang YY, "Analysis of orthologous lncRNAs in humans and mice and their species-specific epigenetic target genes", J South Med Univ, 38, pp.731~735 (2018)[DOI]
111. Yanai I, "Genomewide midrange transcription profiles reveal expression level relationships in human tissue specification", Bioinformatics, 21, pp.650~659 (2005)[DOI]
112. Azlan A, "Systematic identification and characterization of Aedes aegypti long noncoding RNAs(lncRNAs)", Sci Rep, 9, pp.12147~ (2019)[DOI]
113. Kong L, "CPC : assess the protein-coding potential of transcripts using sequence features and support vector machine", Nucleic Acids Res, 35, pp.W345~W349 (2007)[DOI]
114. Wang L, "CPAT : Coding-Potential Assessment Tool using an alignment-free logistic regression model", Nucleic Acids Res, 41, pp.e74~ (2013)[DOI]
115. Li A, "PLEK : a tool for predicting long non-coding RNAs and messenger RNAs based on an improved k-mer scheme", BMC Bioinform, 15, pp.311~ (2014)[DOI]
116. Sun L, "Utilizing sequence intrinsic composition to classify protein-coding and long non-coding transcripts", Nucleic Acids Res, 41, pp.e166~ (2013)[DOI]
117. Tong X, "CPPred : coding potential prediction based on the global description of RNA sequence", Nucleic Acids Res, 47, pp.e43~ (2019)[DOI]
118. Guo JC, "CNIT : a fast and accurate web tool for identifying protein-coding and long non-coding transcripts based on intrinsic sequence composition", Nucleic Acids Res, 47, pp.W516~W522 (2019)[DOI]
119. Gong Y, "lncRNA-screen : an interactive platform for computationally screening long non-coding RNAs in large genomics datasets", BMC Genom, 18, pp.434~ (2017)[DOI]
120. Sun J, "Integrated analysis of non-coding RNA and mRNA expression profiles of 2 pig breeds differing in muscle traits", J Anim Sci, 95, pp.1092~1103 (2017)[DOI]
121. Mohamadipoor Saadatabadi L, "Signature selection analysis reveals candidate genes associated with production traits in Iranian sheep breeds", BMC Vet Res, 17, pp.369~ (2021)[DOI]
122. Li W, "Identification of QTL regions and candidate genes for growth and feed efficiency in broilers", Genet Sel Evol, 53, pp.13~ (2021)[DOI]
123. Alexandre PA, "Exploring the regulatory potential of long non-coding RNA in feed efficiency of indicine cattle", Genes, 11, pp.997~ (2020)[DOI]
124. Ali A, "Integrated analysis of lncRNA and mRNA expression in rainbow trout families showing variation in muscle growth and fillet quality traits", Sci Rep, 8, pp.12111~ (2018)[DOI]
125. Li H, "Comparison of long non-coding RNA expression profiles of cattle and buffalo differing in muscle characteristics", Front Genet, 11, pp.98~ (2020)[DOI]
126. Muniz MMM, "Characterization of novel lncRNA muscle expression profiles associated with meat quality in beef cattle", Evol Appl, 15, pp.706~718 (2022)[DOI]
127. Li R, "Exploring the lncRNAs related to skeletal muscle fiber types and meat quality traits in pigs", Genes, 11, pp.883~ (2020)[DOI]
128. Özdemir S, "Expression profiles of lincRNA and mRNA related to ̇milk yield and milk composition traits in the milk-derived exosomes of Holstein and Doğu Anadolu Kırmızısı cows", Turk J Vet Anim Sci, 44, pp.227~234 (2020)[DOI]
129. Jing H, "LncRNAs transcriptome analysis revealed potential mechanisms of selenium to mastitis in dairy cows", Biol Trace Elem Res, 200, pp.4316~4324 (2022)[DOI]
130. Mu T, "Screening and conjoint analysis of key lncRNAs for milk fat metabolism in dairy cows", Front Genet, 13, pp.772115~ (2022)[DOI]
131. Ouyang Q, "Comparative transcriptome analysis suggests key roles for 5-hydroxytryptamlne receptors in control of goose egg production", Genes, 11, pp.455~ (2020)[DOI]
132. Ning C, "Long non-coding RNA and mRNA profile of liver tissue during four developmental stages in the chicken", Front Genet, 11, pp.574~ (2020)[DOI]
133. Li Q, "Identification and analysis of differentially expressed long non-coding RNAs of Chinese Holstein cattle responses to heat stress", Anim Biotechnol, 31, pp.9~16 (2020)[DOI]
134. Li Y, "Heat stress-responsive transcriptome analysis in the liver tissue of Hu sheep", Genes, 10, pp.395~ (2019)[DOI]
135. Ni Y, "Long noncoding RNA and mRNA profiling of hypothalamic-pituitary-mammary gland axis in lactating sows under heat stress", Genomics, 112, pp.3668~3676 (2020)[DOI]
136. Mumtaz PT, "Expression of lncRNAs in response to bacterial infections of goat mammary epithelial cells reveals insights into mammary gland diseases", Microb Pathog, 162, pp.105367~ (2022)[DOI]
137. Feng X, "Genome-wide differential expression profiling of mRNAs and lncRNAs associated with prolificacy in Hu sheep", Biosci Rep, 38, pp.BSR2017135~ (2018)[DOI]
138. Lian Z, "Role of mRNAs and long non-coding RNAs in regulating the litter size trait in Chuanzhong black goats", Reprod Domest Anim, 55, pp.486~495 (2020)[DOI]
139. Wang Y, "mRNA", lncRNA expression patterns and the function of fibrinogen-like protein 2 in Meishan pig endometrium during the preimplantation phases, 2019, pp.86, 354~369
140. Wichman L, "Dynamic expression of long noncoding RNAs reveals their potential roles in spermatogenesis and fertility", Biol Reprod, 97, pp.313~323 (2017)[DOI]
141. Gil N, "Regulation of gene expression by cis-acting long non-coding RNAs", Nat Rev Genet, 21, pp.102~117 (2020)[DOI]
142. Marques AC, "Intergenic lncRNAs and the evolution of gene expression", Curr Opin Genet Dev, 27, pp.48~53 (2014)[DOI]
143. Carelli FN, "Repurposing of promoters and enhancers during mammalian evolution", Nat Commun, 9, pp.4066~ (2018)[DOI]
144. Xiang JF, "Human colorectal cancerspecific CCAT1-L lncRNA regulates long-range chromatin interactions at the MYC locus", Cell Res, 24, pp.513~531 (2014)[DOI]
145. Ulitsky I, "Evolution to the rescue : using comparative genomics to understand long non-coding RNAs", Nat Rev Genet, 17, pp.601~614 (2016)[DOI]
146. Hezroni H, "A subset of conserved mammalian long non-coding RNAs are fossils of ancestral protein-coding genes", Genome Biol, 18, pp.162~ (2017)[DOI]
147. Lai F, "Activating RNAs associate with mediator to enhance chromatin architecture and transcription", Nature, 494, pp.497~501 (2013)[DOI]
148. Werner MS, "Chromatin-enriched lncRNAs can act as cell-type specific activators of proximal gene transcription", Nat Struct Mol Biol, 24, pp.596~603 (2017)[DOI]
149. Isoda T, "Non-coding transcription instructs chromatin folding and compartmentalization to dictate enhancer-promoter communication and T cell fate", Cell, 171, pp.103~119 (2017)[DOI]
150. Han X, "The lncRNA Hand2os1", Uph locus orchestrates heart development through regulation of precise expression of Hand2, 2019, pp.146, dev176198~
151. Ntini E, "Long ncRNA A-ROD activates its target gene DKK1 at its release from chromatin", Nat Commun, 9, pp.1636~ (2018)[DOI]
152. Wang KC, "A long noncoding RNA maintains active chromatin to coordinate homeotic gene expression", Nature, 472, pp.120~124 (2011)[DOI]
153. Fanucchi S, "Immune genes are primed for robust transcription by proximal long noncoding RNAs located in nuclear compartments", Nat Genet, 51, pp.138~150 (2019)[DOI]
154. Cho SW, "Promoter of lncRNA gene PVT1 is a tumor-suppressor DNA boundary element", Cell, 173, pp.1398~1412 (2018)[DOI]
155. Wang F, "Oncofetal long noncoding RNA PVT1 promotes proliferation and stem cell-like property of hepatocellular carcinoma cells by stabilizing NOP2", Hepatology, 60, pp.1278~1290 (2014)[DOI]
156. Kotzin JJ, "The long non-coding RNA Morrbid regulates Bim and short-lived myeloid cell lifespan", Nature, 537, pp.239~243 (2016)[DOI]
157. Latos PA, "Airn transcriptional overlap, but not its lncRNA products, induces imprinted Igf2r silencing", Science, 338, pp.1469~1472 (2012)[DOI]
158. Thebault P, "Transcription regulation by the noncoding RNA SRG1 requires Spt2-dependent chromatin deposition in the wake of RNA polymerase II", Mol Cell Biol, 31, pp.1288~1300 (2011)[DOI]
159. Elcheva IA, "The role of cis-and trans-acting RNA regulatory elements in leukemia", Cancers, 12, pp.3854~ (2020)[DOI]
160. Yap K, "A short tandem repeatenriched RNA assembles a nuclear compartment to control alternative splicing and promote cell survival", Mol Cell, 72, pp.525~540 (2018)[DOI]
161. Lee S, "Noncoding RNA NORAD regulates genomic stability by sequestering PUMILIO proteins", Cell, 164, pp.69~80 (2016)[DOI]
162. Tichon A, "SAM68 is required for regulation of Pumilio by the NORAD long noncoding RNA", Genes Dev, 32, pp.70~78 (2018)[DOI]
163. Amodio N, "MALAT1 : a druggable long non-coding RNA for targeted anti-cancer approaches", J Hematol Oncol, 11, pp.63~ (2018)[DOI]
164. Kretz M, "Control of somatic tissue differentiation by the long non-coding RNA TINCR", Nature, 493, pp.231~235 (2013)[DOI]
165. Gong C, "lncRNAs transactivate STAU1-mediated mRNA decay by duplexing with 3′ UTRs via Alu elements", Nature, 470, pp.284~288 (2011)[DOI]
166. Jalali S, "Systematic transcriptome wide analysis of lncRNA-miRNA interactions", PLOS ONE, 8, pp.e53823~ (2013)[DOI]
167. Paraskevopoulou MD, "Long non-coding RNAs: methods and protocols", pp.271~286 (2016), Humana Press
168. Wang JY, "CREB up-regulates long non-coding RNA, HULC expression through interaction with microRNA-372 in liver cancer", Nucleic Acids Res, 38, pp.5366~5383 (2010)[DOI]
169. Klein U, "The DLEU2", miR-15a, Cancer Cell, pp.2010, 17[DOI]
170. Cai X, "The imprinted H19 noncoding RNA is a primary microRNA precursor", RNA, 13, pp.313~316 (2007)[DOI]
171. Wang J, "Potential regulatory role of lncRNAmiRNA-mRNA axis in osteosarcoma", Biomed Pharmacother, 121, pp.109627~ (2020)[DOI]
172. Zhou RS, "Integrated analysis of lncRNA-miRNA-mRNA ceRNA network in squamous cell carcinoma of tongue", BMC Cancer, 19, pp.779~ (2019)[DOI]
173. Fan CN, "Systematic analysis of lncRNA–miRNA–mRNA competing endogenous RNA network identifies four-lncRNA signature as a prognostic biomarker for breast cancer", J Transl Med, 16, pp.264~ (2018)[DOI]
174. Kino T, "Noncoding RNA gas5 is a growth arrest–and starvation-associated repressor of the glucocorticoid receptor", Sci Signal, 3, pp.ra8~ (2010)[DOI]
175. Derrien T, "The GENCODE v7 catalog of human long noncoding RNAs : analysis of their gene structure, evolution, and expression", Genome Res, 22, pp.1775~1789 (2012)[DOI]

관련 논문AI추천