Complete genome sequence of Lactococcus taiwanensis strain K_LL004, encoding hydrolytic enzymes of plant polysaccharides isolated from grasshopper (Oxya chinensis sinuosa)
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The Lactococcus taiwanensis strain K_LL004 was isolated from the gut of a grasshopper (Oxya chinensis sinuosa) collected from local farm in Korea. L. taiwanensis strain K_LL004 is the functional probiotic candidate with an ability to hydrolyse plant polysaccharides. The complete genome of the L. taiwanensis strain K_LL004 contains one circular chromosome (1,995,099 bp) with a guanine + cytosine (GC) content of 38.8%. Moreover, 1,929 Protein- coding sequence, 19 rRNA genes, and 62 tRNA genes were identified based on results of annotation. L. taiwanensis strain K_LL004 has a gene, which encodes hydrolytic enzymes such as beta-glucosidase and beta-xylosidase, that hydrolyzes plant polysaccharides.
Abstract
The Lactococcus taiwanensis strain K_LL004 was isolated from the gut of a grasshopper (Oxya chinensis sinuosa) collected from local farm in Korea. L. taiwanensis strain K_LL004 is the functional probiotic candidate with an ability to hydrolyse plant polysaccharides. The complete genome of the L. taiwanensis strain K_LL004 contains one circular chromosome (1,995,099 bp) with a guanine + cytosine (GC) content of 38.8%. Moreover, 1,929 Protein- coding sequence, 19 rRNA genes, and 62 tRNA genes were identified based on results of annotation. L. taiwanensis strain K_LL004 has a gene, which encodes hydrolytic enzymes such as beta-glucosidase and beta-xylosidase, that hydrolyzes plant polysaccharides.
참고문헌 (9)
- McAuliffe O, "Symposium review : Lactococcus lactis from nondairy sources : their genetic and metabolic diversity and potential applications in cheese", J Dairy Sci, 101, pp.3597~3610 (2018)[DOI]
- López-González MJ, "Adaptive evolution of industrial Lactococcus lactis under cell envelope stress provides phenotypic diversity", Front Microbiol, 9, pp.2654~ (2018)[DOI]
- Gurevich A, "QUAST : quality assessment tool for genome assemblies", Bioinformatics, 29, pp.1072~1075 (2013)[DOI]
- Simão FA, "BUSCO : assessing genome assembly and annotation completeness with single-copy orthologs", Bioinformatics, 31, pp.3210~3212 (2015)[DOI]
- Aziz RK, "The RAST Server : rapid annotations using subsystems technology", BMC Genomics, 9, pp.75~ (2008)[DOI]
- Cantalapiedra CP, "eggNOG-mapper v2 : functional annotation, orthology assignments, and domain prediction at the metagenomic scale", Mol Biol Evol, 38, pp.5825~5829 (2021)[DOI]
- Chen L, "VFDB : a reference database for bacterial virulence factors", Nucleic Acids Res, 33, pp.D325~D328 (2005)[DOI]
- McArthur AG, "The comprehensive antibiotic resistance database", Antimicrob Agents Chemother, 57, pp.3348~3357 (2013)[DOI]
- Kaupert Neto AA, "Insights into the plant polysaccharide degradation potential of the xylanolytic yeast Pseudozyma brasiliensis", FEMS Yeast Res, 16, pp.fov117~ (2016)[DOI]