Microarray Applications in Cancer Research
2
조회
0
다운로드
0
인용
0
참고문헌
초록
Abstract
DNA microarray technology permits simultaneous analysis of thousands of DNA sequences for genomic research and diagnostics applications. Microarray technology represents the most recent and exciting advance in the application of hybridization-based technology for biological sciences analysis. This review focuses on the classification (oligonucleotide vs. cDNA) and application (mutation-genotyping vs. gene expression) of microarrays. Oligonucleotide microarrays can be used both in mutation-genotyping and gene expression analysis, while cDNA microarrays can only be used in gene expression analysis. We review microarray mutation analysis,including examining the use of three oligonucleotide microarrays developed in our laboratory to determine mutations in RET, beta-catenin and K-ras genes. We also discuss the use of the Affymetrix GeneChip in mutation analysis. We review microarray gene expression analysis, including the classifying of such studies into four categories: class comparison, class prediction, class discovery and identification of biomarkers.(Cancer Res Treat. 2004;36:207-213)
참고문헌 (51)
- "Technology standards for microarrayresearch In: Schena M (eds) Microarray biochip technology.", pp.1~18 (2000), Eaton publishing
- "Advantages and limitationsof microarray technology in human cancer", 22, pp.6497~6507 (2003)
- "DNA analysis and diagnostics on oligonucleotidemicrochips", 93, pp.4913~4918 (1996)
- "Evaluation of the performanceof a p53 sequencing microarray chip using 140 previouslysequenced bladder tumor samples", 46, pp.1555~1561 (2000)
- "Strategies for mutationalanalysis of the large multiexon ATM gene using high-densityoligonucleotide arrays", 8, pp.1245~1258 (1998)
- "Development and application of an oligonucleotidemicroarray for mutational analysis. In: Hardiman G (eds)Microarrays methods and applications", pp.250~271 (2003), DNApress
- "Comparison of TP53mutations identified by oligonucleotide microarray and conventionalDNA sequence analysis", 60, pp.2716~2722 (2000)
- "RET oligonucleotidemicroarray for the detection of RET mutations inmultiple endocrine neoplasia type 2 syndromes", 8, pp.457~463 (2002)
- "K-rasmutation detection by hybridization to a polypyrrole DNAchip", 47, pp.186~194 (2001)
- "Methylation-specificoligonucleotide microarray:a new potential forhigh-throughput methylation analysis", 12, pp.158~164 (2002)
- "Sporadic fundic gland polyps:common gastric polypsarising through activating mutations in the beta-catenin gene", 158, pp.1005~1010 (2001)
- "Frequentbeta-catenin mutations in juvenile nasopharyngeal angiofibromas", 158, pp.1073~1078 (2001)
- "Frequent nuclear beta-catenin accumulationand associated mutations in endometrioid-type endometrialand ovarian carcinomas with squamous differentiation", 194, pp.59~67 (2001)
- "Development and applicationsof a beta-catenin oligonucleotide microarray:beta-cateninmutations are dominantly found in the proximal colon cancerswith microsatellite instability", 9, pp.2920~2925 (2003)
- "Relationship of Ki-ras mutations in coloncancers to tumor location,stage,and survival:a populationbasedstudy", 9, pp.1193~1197 (2000)
- "Kirsten ras mutations in patients withcolorectal cancer:the ‘RASCAL II’ study", 85, pp.692~696 (2001)
- "Application of microarrays to theanalysis of gene expression in cancer", 48, pp.1170~1177 (2002)
- "Large-scale genomic analysisusing affymetrix GeneChip probe arrays. In: Schena M.(ed.) Microarray Biochip Technology", pp.201~220 (2000), EatonPublishing
- "Comparison of two CYP2D6 genotyping methods and assessmentof genotype-phenotype relationships", 49, pp.542~551 (2003)
- "Expression profiling in cancer using cDNA microarrays", 20, pp.223~229 (1999)
- "Expression monitoring by hybridization to highdensityoligonucleotide arrays", 14, pp.1675~1680 (1996)
- "Cancer diagnosis and microarrays", 35, pp.119~124 (2003)
- "Applications of biochips:from diagnostics to personalizedmedicine", 7, pp.285~289 (2004)
- "Expression profiling using microarrays fabricated by an ink-jetoligonucleotide synthesizer", pp.342~347 (2001)
- "Navigating gene expression usingmicroarrays--a technology review", 3, pp.190~195 (2001)
- "DNA chip technology", 187, pp.267~271 (1999)
- "Expression profileanalysis of neurodegenerative disease:advances in specificityand resolution", 29, pp.1161~1168 (2004)
- "Gene expressionprofiles derived from fine needle aspiration correlate withresponse to systemic chemotherapy in breast cancer", 4, pp.3~ (2002)
- "Oligonucleotide microarray-based mutation detection of the K-ras gene in colorectalcancers using Competitive DNA Hybridization (CDH).", 50, pp.1688~1691 (2004)
- "Largescaleidentification, mapping, and genotyping of single-nucleotidepolymorphisms in the human genome", 280, pp.1077~1082 (1998)
- "Genome-widedetection of allelic imbalance using human SNPs and highdensityDNA arrays", 10, pp.1126~1137 (2000)
- "Detectionof heterozygous mutations in BRCA1 using high densityoligonucleotide arrays and two-colour fluorescence analysis", 14, pp.441~447 (1996)
- "Universal DNA array detection of small insertions anddeletions in BRCA1 and BRCA2", 18, pp.561~564 (2000)
- "Rapid p53 sequenceanalysis in primary lung cancer using an oligonucleotide probearray", 96, pp.7382~7387 (1999)
- "Diagnostic and prognostic prediction using gene expressionprofiles in high-dimensional microarray data", 89, pp.1599~1604 (2003)
- "Pitfallsin the use of DNA microarray data for diagnostic and prognosticclassification", 95, pp.14~18 (2003)
- "Molecular classification of cancer class discovery and class prediction by gene expression monitoring", 286, pp.531~537 (1999)
- "Gene-expression profiles inhereditary breast cancer", 344, pp.539~548 (2001)
- "Differential expression ofDOC-1 in microsatellite-unstable human colorectal cancer", 22, pp.6304~6310 (2003)
- "Prediction of survival indiffuse large-B-cell lymphoma based on the expression of sixgenes", 350, pp.1828~1837 (2004)
- "A gene-expression signature as a predictorofsurvival in breast cancer", 347, pp.1999~2009 (2002)
- "Gene expression predictors of breast canceroutcomes", 361, pp.1590~1596 (2003)
- "Prediction of sensitivity of esophageal tumorsto adjuvant chemotherapy by cDNA microarray analysis ofgene-expression profiles", 61, pp.6474~6479 (2001)
- "Gene expression profiling-based prediction of response ofcolon carcinoma cells to 5-fluorouracil and camptothecin", 63, pp.8791~8812 (2003)
- "DNA microarray analysis of the correlation betweengene expression patterns and acquired resistance to 5-FU", cisplatin in gastric cancer, 2004, pp.316, 781~789
- "Distinct types of diffuse large B-cell lymphoma identified bygene expression profiling", 403, pp.503~511 (2000)
- "Molecular classification of cutaneous malignant melanoma bygene expression profiling", 406, pp.536~540 (2000)
- "Identification of genes with differentialexpression in acquired drug-resistant gastric cancer cells usinghigh-density oligonucleotide microarrays", 10, pp.272~284 (2004)
- "Increased expression of metallothionein is associated withirinotecan resistance in gastric cancer", 64, pp.4703~4706 (2004)
- "Genome-wide profiling of papillary thyroid cancer identifiesMUC1 as an independent prognostic marker", 64, pp.3780~3789 (2004)
- "Serummacrophage inhibitory cytokine 1 as a marker of pancreaticand other periampullary cancers", 10, pp.2386~2392 (2004)
