Exploring Levansucrase Operon Regulating Levan-Type Fructooligosaccharides (L-FOSs) Production in Priestia koreensis HL12

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참고문헌 (82)

1. Domżał-Kędzia M, "Recent developments and applications of microbial levan, a versatile polysaccharide-based biopolymer", Molecules, 28, pp.5407~ (2023)
2. Hamada MA, "Bio_fabricated levan polymer from Bacillus subtilis MZ292983.1 with antibacterial, antibiofilm, and burn healing properties", Appl. Sci, 12, pp.6413~ (2022)
3. Cheng R, "Biosynthesis and prebiotic activity of a linear levan from a new Paenibacillus isolate", Appl. Microbiol. Biotechnol, 105, pp.769~787 (2021)
4. Bruni GO, "Characterization of levan fructan produced by a Gluconobacter japonicus strain isolated from a sugarcane processing facility", Microorganisms, 12, pp.107~ (2024)
5. Cai G, "Levan from Bacillus amyloliquefaciens JN4 acts as a prebiotic for enhancing the intestinal adhesion capacity of Lactobacillus reuteri JN101", Int. J. Biol. Macromol, 146, pp.482~487 (2020)
6. Erdal Altıntaş Ö, "Biosynthesis of levan by Halomonas elongata 153B : optimization for enhanced production and potential biological activities for pharmaceutical field", J. Polym. Environ, 31, pp.1440~1455 (2022)
7. Gojgic-Cvijovic GD, "Production of levan by Bacillus licheniformis NS032 in sugar beet molasses-based medium", Int. J. Biol. Macromol, 121, pp.142~151 (2019)
8. Hövels M, "High yield production of levan-type fructans by Gluconobacter japonicus LMG 1417", Int. J. Biol. Macromol, 164, pp.295~303 (2020)
9. Jadaun JS, "Catalytic biosynthesis of levan and short-chain fructooligosaccharides from sucrose-containing feedstocks by employing the levansucrase from Leuconostoc mesenteroides MTCC10508", Int. J. Biol. Macromol, 127, pp.486~495 (2019)
10. Kim KH, "Cosmeceutical properties of levan produced by Zymomonas mobilis", J. Cosmet. Sci, 56, pp.395~406 (2005)
11. Ni D, "Biosynthesis of levan from sucrose using a thermostable levansucrase from Lactobacillus reuteri LTH5448", Int. J. Biol. Macromol, 113, pp.29~37 (2018)
12. Ragab TIM, "Scaling up of levan yield in Bacillus subtilis M and cytotoxicity study on levan and its derivatives", J. Biosci. Bioeng, 127, pp.655~662 (2019)
13. Wang S, "Expanding the horizons of levan : from microbial biosynthesis to applications and advanced detection methods", World J. Microbiol. Biotechnol, 40, pp.214~ (2024)
14. Xu W, "Recent advances in levansucrase and inulosucrase : evolution, characteristics, and application", Crit. Rev. Food Sci. Nutr, 59, pp.3630~3647 (2019)
15. Tezgel N, "Microbial Enzymes: Roles and Applications in Industries", pp.1~39 (2020), Springer Singapore
16. Xu W, "A review of fructosyl-transferases from catalytic characteristics and structural features to reaction mechanisms and product specificity", Food Chem, 440, pp.138250~ (2024)
17. Zhang W, "An overview of levan-degrading enzyme from microbes", Appl. Microbiol. Biotechnol, 103, pp.7891~7902 (2019)
18. Vu THN, "A genomic perspective on the potential of termite-associated Cellulosimicrobium cellulans MP1 as producer of plant biomass-acting enzymes and exopolysaccharides", PeerJ, 9, pp.e11839~ (2021)
19. Jeckelmann JM, "Carbohydrate transport by group translocation : the bacterial phosphoenolpyruvate : sugar phosphotransferase system", Subcell. Biochem, 92, pp.223~274 (2019)
20. Jeckelmann JM, "Transporters of glucose and other carbohydrates in bacteria", Pflugers Arch, 472, pp.1129~1153 (2020)
21. Ruan H, "The glucose uptake systems in Corynebacterium glutamicum : a review", World J. Microbiol. Biotechnol, 36, pp.126~ (2020)
22. Erni B, "The bacterial phosphoenolpyruvate : sugar phosphotransferase system(PTS) : an interface between energy and signal transduction", J. Iran Chem. Soc, 10, pp.593~630 (2013)
23. Deutscher J, "How phosphotransferase system-related protein phosphorylation regulates carbohydrate metabolism in bacteria", Microbiol. Mol. Biol. Rev, 70, pp.939~1031 (2006)
24. Lindner SN, "Phosphotransferase system-independent glucose utilization in Corynebacterium glutamicum by inositol permeases and glucokinases", Appl. Environ. Microbiol, 77, pp.3571~3581 (2011)
25. Lekakarn H, "A novel low temperature active maltooligosaccharidesforming amylase from Bacillus koreensis HL12 as biocatalyst for maltooligosaccharide production", 3 Biotech, 12, pp.134~ (2022)
26. Tamura K, "MEGA11 : molecular evolutionary genetics analysis version 11", Mol. Biol. Evol, 38, pp.3022~3027 (2021)
27. Saitou N, "The neighbor-joining method : a new method for reconstructing phylogenetic trees", Mol. Biol. Evol, 4, pp.406~425 (1987)
28. Sanderson MJ, "Confidence limits on phylogenies : the bootstrap revisited", Cladistics, 5, pp.113~129 (1989)
29. Kimura M, "A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences", J. Mol. Evol, 16, pp.111~120 (1980)
30. Chen S, "fastp : an ultra-fast all-in-one FASTQ preprocessor", Bioinformatics, 34, pp.i884~i890 (2018)
31. Bankevich A, "SPAdes : a new genome assembly algorithm and its applications to single-cell sequencing", J. Comput. Biol, 19, pp.455~477 (2012)
32. Manni M, "BUSCO : assessing genomic data quality and beyond", Curr. Protoc, 1, pp.e323~ (2021)
33. Parks DH, "CheckM : assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes", Genome Res, 25, pp.1043~1055 (2015)
34. Aziz RK, "The RAST Server : rapid annotations using subsystems technology", BMC Genom, 9, pp.75~ (2008)
35. Zhang H, "dbCAN2 : a meta server for automated carbohydrate-active enzyme annotation", Nucleic Acids Res, 46, pp.W95~w101 (2018)
36. Richter M, "JSpeciesWS : a web server for prokaryotic species circumscription based on pairwise genome comparison", Bioinformatics, 32, pp.929~931 (2015)
37. Törönen P, "PANNZER2 : a rapid functional annotation web server", Nucleic Acids Res, 46, pp.W84~w88 (2018)
38. Huerta-Cepas J, "eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses", Nucleic Acids Res, 47, pp.D309~D314 (2018)
39. Marchler-Bauer A, "CDD : NCBI's conserved domain database", Nucleic Acids Res, 43, pp.D222~D226 (2014)
40. Teufel F, "SignalP 6.0 predicts all five types of signal peptides using protein language models", Nat. Biotechnol, 40, pp.1023~1025 (2022)
41. Reese MG, "Application of a time-delay neural network to promoter annotation in the Drosophila melanogaster genome", Comput. Chem, 26, pp.51~56 (2001)
42. Gupta RS, "Robust demarcation of 17 distinct Bacillus species clades, proposed as novel Bacillaceae genera, by phylogenomics and comparative genomic analyses: description of Robertmurraya kyonggiensis sp. nov. and proposal for an emended genus Bacillus limiting it only to the members of the Subtilis and Cereus clades of species", Int. J. Syst. Evol. Microbiol, 70, pp.5753~5798 (2020)
43. Wang J, "Biosynthesis and structural characterization of levan by a recombinant levansucrase from Bacillus subtilis ZW019", Waste Biomass Valori, 13, pp.4599~4609 (2022)
44. Wu C, "Biosynthesis of lactosylfructoside by an intracellular levansucrase from Bacillus methylotrophicus SK 21.002", Carbohydr. Res, 401, pp.122~126 (2015)
45. Kang HK, "Cloning and expression of levansucrase from Leuconostoc mesenteroides B-512 FMC in Escherichia coli", Biochim. Biophys. Acta, 1727, pp.5~15 (2005)
46. Polsinelli I, "Comparison of the levansucrase from the epiphyte Erwinia tasmaniensis vs its homologue from the phytopathogen Erwinia amylovora", Int. J. Biol. Macromol, 127, pp.496~501 (2019)
47. Khandekar S, "The conserved upstream region of lscB", C determines expression of different levansucrase genes in plant pathogen Pseudomonas syringae, 2014, pp.14, 79~
48. Martínez-Fleites C, "Crystal structure of levansucrase from the Gram-negative bacterium Gluconacetobacter diazotrophicus", Biochem. J, 390, pp.19~27 (2005)
49. Gao S, "Expression and characterization of levansucrase from Clostridium acetobutylicum", J. Agric. Food Chem, 65, pp.867~871 (2017)
50. Shaheen S, "Hyper-production of levansucrase from Zymomonas mobilis KIBGEIB14 using submerged fermentation technique", Pak. J. Pharm. Sci, 30, pp.2053~2059 (2017)
51. Kirtel O, "Levansucrase from Halomonas smyrnensis AAD6(T) : first halophilic GH-J clan enzyme recombinantly expressed, purified, and characterized", Appl. Microbiol. Biotechnol, 102, pp.9207~9220 (2018)
52. Pereira Y, "yveB, Encoding endolevanase LevB, is part of the sacB-yveB-yveA levansucrase tricistronic operon in Bacillus subtilis", Microbiology(Reading), 147, pp.3413~3419 (2001)
53. Lekakarn H, "Functional characterization of recombinant endo-levanase(LevBk)from Bacillus koreensis HL12 on short-chain levan-type fructooligosaccharides production", Protein J, 41, pp.477~488 (2022)
54. Domżał-Kędzia M, "Recent developments and applications of microbial levan, a versatile polysaccharide-based biopolymer", Molecules, 28, pp.5407~ (2023)
55. Daguer J-P, "Autogenous modulation of the Bacillus subtilis sacB–levB–yveA levansucrase operon by the levB transcript", Microbiology, 150, pp.3669~3679 (2004)
56. Liyaskina EV, "Production and сharacterization of the exopolysaccharide from strain Paenibacillus polymyxa 2020", PLoS One, 16, pp.e0253482~ (2021)
57. Vu NT, "A genomic perspective on the potential of termite-associated Cellulosimicrobium cellulans MP1 as producer of plant biomass-acting enzymes and exopolysaccharides", PeerJ, 9, pp.e11839~ (2021)
58. Senthilkumar V, "Characterization of multiple promoters and transcript stability in the sacB-sacC gene cluster in Zymomonas mobilis", Arch. Microbiol, 191, pp.529~541 (2009)
59. Tian T, "Sucrose triggers a novel signaling cascade promoting Bacillus subtilis rhizosphere colonization", ISME J, 15, pp.2723~2737 (2021)
60. Senthilkumar V, "Disruption of the Zymomonas mobilis extracellular sucrase gene(sacC)improves levan production", J. Appl. Microbiol, 96, pp.671~676 (2004)
61. Steinmetz M, "The DNA sequence of the gene for the secreted Bacillus subtilis enzyme levansucrase and its genetic control sites", Mol. Genet. Genomics, 200, pp.220~228 (1985)
62. Waldherr FW, "Genetic and functional characterization of Lactobacillus panis levansucrase", Arch. Microbiol, 190, pp.497~505 (2008)
63. Rathsam C, "Role of C-terminal domains in surface attachment of the fructosyltransferase of Streptococcus salivarius ATCC 25975", J. Bacteriol, 180, pp.6400~6403 (1998)
64. Borchert TV, "Genetics and Biotechnology of Bacilli", pp.171~177 (1990), Academic Press
65. Jakob F, "Comparison of novel GH 68 levansucrases of levan-overproducing Gluconobacter species", Acetic Acid Bacteria, 1, pp.2~ (2012)
66. Li H, "Characterization and mutational analysis of three allelic lsc genes encoding levansucrase in Pseudomonas syringae", J. Bacteriol, 183, pp.3282~3292 (2001)
67. Song K-B, "Nucleotide sequence of levansucrase gene(levU)of Zymomonas mobilis ZM1(ATCC10988)", Biochim. Biophys. Acta, 1173, pp.320~324 (1993)
68. Borchert TV, "Effect of signal sequence alterations on export of levansucrase in Bacillus subtilis", J. Bacteriol, 173, pp.276~282 (1991)
69. Gu Y, "Improvement of levan production in Bacillus amyloliquefaciens through metabolic optimization of regulatory elements", Appl. Microbiol. Biotechnol, 101, pp.4163~4174 (2017)
70. Zeng L, "Sucrose-and fructose-specific effects on the transcriptome of Streptococcus mutans, as determined by RNA sequencing", Appl. Environ. Microbiol, 82, pp.146~156 (2016)
71. Chandravanshi M, "Identification and characterization of ABC transporters for carbohydrate uptake in Thermus thermophilus HB8", Gene, 696, pp.135~148 (2019)
72. Carreón-Rodríguez OE, "Glucose transport in Escherichia coli : from basics to transport engineering", Microorganisms, 11, pp.1588~ (2023)
73. Gaigalat L, "The DeoR-type transcriptional regulator SugR acts as a repressor for genes encoding the phosphoenolpyruvate : sugar phosphotransferase system(PTS)in Corynebacterium glutamicum", BMC Mol. Biol, 8, pp.104~ (2007)
74. Castro R, "Characterization of the individual glucose uptake systems of Lactococcus lactis : mannose-PTS, cellobiose-PTS and the novel GlcU permease", Mol. Microbiol, 71, pp.795~806 (2009)
75. Sundar GS, "Route of glucose uptake in the group a Streptococcus impacts SLS-mediated hemolysis and survival in human blood", Front. Cell. Infect. Microbiol, 8, pp.71~ (2018)
76. Fiegler H, "Identification of a gene in Staphylococcus xylosus encoding a novel glucose uptake protein", J. Bacteriol, 181, pp.4929~4936 (1999)
77. Ates O, "The stimulatory effect of mannitol on levan biosynthesis: lessons from metabolic systems analysis of Halomonas smyrnensis AAD6(T.)", Biotechnol. Prog, 29, pp.1386~1397 (2013)
78. Méndez-Lorenzo L, "Intrinsic levanase activity of Bacillus subtilis 168 levansucrase(SacB)", PLoS One, 10, pp.e0143394~ (2015)
79. Öner ET, "Review of levan polysaccharide : from a century of past experiences to future prospects", Biotechnol. Adv, 34, pp.827~844 (2016)
80. Dos Santos L, "Characterization and optimization of levan production by Bacillus subtilis NATTO", Rom. Biotechnol. Lett, 18, pp.8413~8422 (2013)
81. Zhang T, "Biosynthesis of levan by levansucrase from Bacillus methylotrophicus SK 21.002", Carbohydr. Polym, 101, pp.975~981 (2014)
82. Lorenzetti MFS., "Alginate", PVA beads for levan production by Zymomonas mobilis, 2015, pp.38, 31~36

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