Genomic Analysis of Halotolerant Bacterial Strains Martelella soudanensis NC18 T and NC20

키워드

참고문헌 (61)

1. Rivas R, "Martelella mediterranea gen. nov., sp. nov., a novel α-proteobacterium isolated from a subterranean saline lake", Int. J. Syst. Evol. Microbiol, 55, pp.955~959 (2005)
2. Bibi F, "Martelella endophytica sp. nov., an antifungal bacterium associated with a halophyte", Int. J. Syst. Evol. Microbiol, 63, pp.2914~2919 (2013)
3. Zhang D, "Martelella radicis sp. nov. and Martelella mangrovi sp. nov., isolated from mangrove sediment", Int. J. Syst. Evol. Microbiol, 64, pp.3104~3108 (2014)
4. Chung EJ, "Martelella suaedae sp. nov. and Martelella limonii sp. nov., isolated from the root of halophytes", Int. J. Syst. Evol. Microbiol, 66, pp.3917~3922 (2016)
5. Lee SD, "Martelella caricis sp. nov., isolated from a rhizosphere mudflat", Int. J. Syst. Evol. Microbiol, 69, pp.266~270 (2019)
6. Young-Ju Kim, "Martelella lutilitoris sp. nov., isolated from a tidal mudflat", The Journal of Microbiology, 57(11), pp.976~981 (2019), 한국미생물학회[DOI]
7. Li M, "Martelella alba sp. nov., isolated from mangrove rhizosphere soil within the Beibu Gulf", Arch. Microbiol, 203, pp.1779~1786 (2021)
8. Cui C, "Complete genome of Martelella sp. AD-3, a moderately halophilic polycyclic aromatic hydrocarbons-degrading bacterium", J. Biotechnol, 225, pp.29~30 (2016)
9. Remonsellez F, "Characterization and salt response in recurrent halotolerant Exiguobacterium sp. SH31 isolated from sediments of Salar de Huasco, Chilean Altiplano", Front. Microbiol, 9, pp.2228~ (2018)
10. Oren A, "Microbial life at high salt concentrations : phylogenetic and metabolic diversity", Saline Syst, 4, pp.2~ (2008)
11. Weinisch L, "Identification of osmoadaptive strategies in the halophile, heterotrophic ciliate Schmidingerothrix salinarum", PLoS. Biol, 16, pp.e2003892~ (2018)
12. Christian J, "Solute concentrations within cells of halophilic and non-halophilic bacteria", Biochim. Biophys. Acta, 65, pp.3~17 (1962)
13. Ya Jie Zou, "Cloning and Characterization of a Na+", H+ Antiporter Gene of the Moderately Halophilic Bacterium Halobacillus aidingensis AD-6T, 2008, pp.46(4), 415~421[DOI]
14. Kempf B, "Uptake and synthesis of compatible solutes as microbial stress responses to high-osmolality environments", Arch. Microbiol, 170, pp.319~330 (1998)
15. Wood JM, "Osmosensing and osmoregulatory compatible solute accumulation by bacteria", Comp. Biochem. Physiol. A, 130, pp.437~460 (2001)
16. Lee J, "Characterization of Martelella soudanensis sp. nov., isolated from a mine sediment", Microorganisms, 9, pp.1736~ (2021)
17. Bolger AM, "Trimmomatic : a flexible trimmer for Illumina sequence data", Bioinformatics, 30, pp.2114~2120 (2014)
18. "BBMap: a fast, accurate, splice-aware aligner" (2014)[URL]
19. Hunt M, "Circlator : automated circularization of genome assemblies using long sequencing reads", Genome Biol, 16, pp.294~ (2015)
20. Lee I, "ContEst16S : an algorithm that identifies contaminated prokaryotic genomes using 16S RNA gene sequences", Int. J. Syst. Evol. Microbiol, 67, pp.2053~2057 (2017)
21. Hyatt D, "Prodigal : prokaryotic gene recognition and translation initiation site identification", BMC Bioinformatics, 11, pp.119~ (2010)
22. Schattner P, "The tRNAscan-SE, snoscan and snoGPS web servers for the detection of tRNAs and snoRNAs", Nucleic Acids Res, 33, pp.686~689 (2005)
23. Nawrocki EP, "Rfam 12.0: updates to the RNA families database", Nucleic Acids Res, 43, pp.130~137 (2015)
24. Edgar RC, "PILER-CR : fast and accurate identification of CRISPR repeats", BMC Bioinformatics, 8, pp.18~ (2007)
25. Bland C, "CRISPR recognition tool(CRT) : a tool for automatic detection of clustered regularly interspaced palindromic repeats", BMC Bioinformatics, 8, pp.209~ (2007)
26. Kanehisa M, "Data, information, knowledge and principle : back to metabolism in KEGG", Nucleic Acids Res, 42, pp.199~205 (2014)
27. Powell S, "eggNOG v4. 0: nested orthology inference across 3686 organisms", Nucleic Acids Res, 42, pp.231~239 (2014)
28. Overbeek R, "The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes", Nucleic Acids Res, 33, pp.5691~5702 (2005)
29. Aziz RK, "The RAST Server : rapid annotations using subsystems technology", BMC Gennomics, 9, pp.75~ (2008)
30. Yoon S, "Introducing EzBioCloud : a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies", Int. J. Syst. Evol. Microbiol, 67, pp.1613~ (2017)
31. Larkin MA, "Clustal W and Clustal X version 2.0", Bioinformatics, 23, pp.2947~2948 (2007)
32. Hall T, "BioEdit : an important software for molecular biology", GERF Bull Biosci, 2, pp.60~61 (2011)
33. Tamura K, "MEGA6: molecular evolutionary genetics analysis version 6.0", Mol. Biol. Evol, 30, pp.2725~2729 (2013)
34. Meier-KolthoffJP, "Genome sequence-based species delimitation with confidence intervals and improved distance functions", BMC Bioinformatics, 14, pp.60~ (2013)
35. Yoon S, "A large-scale evaluation of algorithms to calculate average nucleotide identity", Antonie Van Leeuwenhoek, 110, pp.1281~1286 (2017)
36. Darling AE, "Analyzing patterns of microbial evolution using the mauve genome alignment system", Methods Mol. Biol, 396, pp.135~152 (2007)
37. Chun J, "Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes", Int. J. Syst. Evol. Microbiol, 68, pp.461~466 (2018)
38. Richter M, "Shifting the genomic gold standard for the prokaryotic species definition", Proc. Nat. Acad. Sci. USA, 106, pp.19126~19131 (2009)
39. Wu H, "Association analysis of the general environmental conditions and prokaryotes’ gene distributions in various functional groups", Genomics, 96, pp.27~38 (2010)
40. Maurel C, "The vacuolar membrane protein gamma-TIP creates water specific channels in Xenopus oocytes", EMBO J, 12, pp.2241~2247 (1993)
41. Bontemps-Gallo S, "What do we know about osmoadaptation of Yersinia pestis?", Arch. Microbiol, 204, pp.11~ (2021)
42. Wood JM, "Bacterial osmosensing transporters", Methods Enzymol, 428, pp.77~107 (2007)
43. Sleator RD, "Bacterial osmoadaptation : the role of osmolytes in bacterial stress and virulence", FEMS Microbiol. Rev, 26, pp.49~71 (2002)
44. Altendorf K, "Osmotic stress", EcoSal Plus, 3, pp.2~ (2009)
45. Grammann K, "New type of osmoregulated solute transporter identified in halophilic members of the bacteria domain : TRAP transporter TeaABC mediates uptake of ectoine and hydroxyectoine in Halomonas elongata DSM 2581T", J. Bacteriol, 184, pp.3078~3085 (2002)
46. Wood JM, "Osmosensing and osmoregulatory compatible solute accumulation by bacteria", Comp. Biochem. Physiol. A-Mol. Integr. Physiol, 130, pp.437~460 (2001)
47. Bucur FI, "Resistance of Listeria monocytogenes to stress conditions encountered in food and food processing environments", Front. Microbiol, 9, pp.2700~ (2018)
48. Plantinga TH, "Functional characterization of the Escherichia coli K-12 yiaMNO transport protein genes", Mol. Membr. Biol, 21, pp.51~57 (2004)
49. Liu D, "Analysis of the probiotic characteristics and adaptability of Lactiplantibacillus plantarum DMDL 9010 to gastrointestinal environment by complete genome sequencing and corresponding phenotypes", LWT, 158, pp.113129~ (2022)
50. Martí-Arbona R, "Discovery of a choline-responsive transcriptional regulator in Burkholderia xenovorans", J. Mol. Biol. Res, 3, pp.91~ (2013)
51. Zhang H, "Choline and osmotic-stress tolerance induced in Arabidopsis by the soil microbe Bacillus subtilis(GB03)", Mol. Plant-Microbe Interact, 23, pp.1097~1104 (2010)
52. Widderich N, "Biochemistry and crystal structure of ectoine synthase : a metal-containing member of the cupin superfamily", PLoS One, 11, pp.e0151285~ (2016)
53. Hung C, "The phylogenetic analysis and putative function of lysine 2, 3-aminomutase from methanoarchaea infers the potential biocatalysts for the synthesis of β-lysine", J. Microbiol. Immunol. Infect, 46, pp.1~10 (2013)
54. Godard T, "Metabolic rearrangements causing elevated proline and polyhydroxybutyrate accumulation during the osmotic adaptation response of Bacillus megaterium", Front. Bioeng. Biotechnol, 8, pp.47~ (2020)
55. Tanudjaja E, "Kup-mediated Cs+ uptake and Kdp-driven K+ uptake coordinate to promote cell growth during excess Cs+ conditions in Escherichia coli", Sci. Rep, 7, pp.2122~ (2017)
56. Álvarez-Ordóñez A, "Salmonella spp. survival strategies within the host gastrointestinal tract", Microbiology, 157, pp.3268~3281 (2011)
57. Mainka T, "Potential applications of halophilic microorganisms for biological treatment of industrial process brines contaminated with aromatics", J. Ind. Microbiol. Biotechnol, 48, pp.kuab015~ (2021)
58. Oren A, "Industrial and environmental applications of halophilic microorganisms", Environ. Technol, 31, pp.825~834 (2010)
59. Kelly Dumorné, "Extremozymes: A Potential Source for Industrial Applications", Journal of Microbiology and Biotechnology, 27(4), pp.649~659 (2017), 한국미생물·생명공학회[DOI]
60. Amoozegar MA, "Halophiles and their vast potential in biofuel production", Front. Microbiol, 10, pp.1895~ (2019)
61. Corral P, "Halophiles and their biomolecules : recent advances and future applications in biomedicine", Mar. Drugs, 18, pp.33~ (2020)

관련 논문AI추천