Complete Genome Sequence of Corallococcus coralloides KYC2213, a Myxobacterium Isolated from the Suncheon Bay Wetland in Korea
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The whole genome sequence of the myxobacterium Corallococcus coralloides KYC2213, isolated from the Suncheon Bay Wetland in Korea, has been analyzed. The genome was assembled into a 9,655,077 bp circular chromosome with a G+C content of 70.73%. It contains 7,624 protein-coding genes, 9 rRNA genes, and 57 tRNA genes. Secondary metabolite biosynthetic gene clusters (smBGCs) were identified in 38 regions, 21 of which contained 85 non-ribosomal peptide synthetase and polyketide synthase genes. However, the majority of the smBGCs could not be linked to predictable products, with the exception of those for carotenoids, cystobactamids, geosmins, and the lipids VEPE/AEPE/TG-1.
Abstract
The whole genome sequence of the myxobacterium Corallococcus coralloides KYC2213, isolated from the Suncheon Bay Wetland in Korea, has been analyzed. The genome was assembled into a 9,655,077 bp circular chromosome with a G+C content of 70.73%. It contains 7,624 protein-coding genes, 9 rRNA genes, and 57 tRNA genes. Secondary metabolite biosynthetic gene clusters (smBGCs) were identified in 38 regions, 21 of which contained 85 non-ribosomal peptide synthetase and polyketide synthase genes. However, the majority of the smBGCs could not be linked to predictable products, with the exception of those for carotenoids, cystobactamids, geosmins, and the lipids VEPE/AEPE/TG-1.
참고문헌 (10)
- Parte AC, "List of Prokaryotic names with Standing in Nomenclature(LPSN)moves to the DSMZ", Int. J. Syst. Evol. Microbiol, 70, pp.5607~5612 (2020)
- Reichenbach H, "Bergey's Manual of Systematic Bacteriology, vol. 2", pp.1079~1082 (2005), Springer
- Weissman KJ, "Myxobacterial secondary metabo-lites : bioactivities and modes-of-action", Nat. Prod. Rep, 27, pp.1276~1295 (2010)
- Herrmann J, "Natural products from myxobacteria : novel metabolites and bioactivities", Nat. Prod. Rep, 34, pp.135~160 (2017)
- Hyun H, "Secondary metabolites of myxobacteria", Korean J. Microbiol, 54, pp.175~187 (2018)
- Couturier C, "Structure elucidation, total synthesis, antibacterial in vivo efficacy and biosynthesis proposal of myxobacterial corramycin", Angew. Chem. Int. Ed, 61, pp.e202210747~ (2022)
- Shin H, "Production of antimicrobial substances by strains of myxobacteria Corallococcus and Myxococcus", Korean J. Microbiol. Biotechnol, 41, pp.44~51 (2013)
- Yoon SH, "A large-scale evaluation of algorithms to calculate average nucleotide identity", Antonie Van Leeuwenhoek, 110, pp.1281~1286 (2017)
- Blin K, "antiSMASH 7. 0 : new and improved predictions for detection, regulation, chemical structures, and visualisation", Nucleic Acids Res, 51, pp.W46~W50 (2023)
- Groß S, "In vivo and in vitro reconstitution of unique key steps in cystobactamid antibiotic biosynthesis", Nat. Commun, 12, pp.1696~ (2021)