Draft Genome Sequence of Weissella koreensis Strain HJ, a Probiotic Bacterium Isolated from Kimchi
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초록
Here we report the draft genome sequence of Weissella koreensis strain HJ and genomic analysis of its key features. The genome consists of 1,427,571 bp with a GC content of 35.5%, and comprises 1,376 coding genes. In silico analysis revealed the absence of pathogenic factors within the genome. The genome harbors several genes that play an important role in the survival of the gastrointestinal tract. In addition, a type III polyketide synthase cluster was identified. Pangenome analysis identified 68 unique genes in W. koreensis strain HJ. The genome information of this strain provides the basis for understanding its probiotic properties.
Abstract
Here we report the draft genome sequence of Weissella koreensis strain HJ and genomic analysis of its key features. The genome consists of 1,427,571 bp with a GC content of 35.5%, and comprises 1,376 coding genes. In silico analysis revealed the absence of pathogenic factors within the genome. The genome harbors several genes that play an important role in the survival of the gastrointestinal tract. In addition, a type III polyketide synthase cluster was identified. Pangenome analysis identified 68 unique genes in W. koreensis strain HJ. The genome information of this strain provides the basis for understanding its probiotic properties.
참고문헌 (10)
- Jeong SE, "Genomic and metatranscriptomic analyses of Weissella koreensis reveal its metabolic and fermentative features during kimchi fermentation", Food Microbiol, 76, pp.1~10 (2018)
- Apostolakos I, "Functional and safety characterization of Weissella paramesenteroides strains isolated from dairy products through whole-genome sequencing and comparative genomics", Dairy, 3, pp.799~813 (2022)
- Kim E, "Weissella and the two Janus faces of the genus", Appl. Microbiol. Biotechnol, 107, pp.1119~1127 (2023)
- Kang BK, "The influence of red pepper powder on the density of Weissella koreensis during kimchi fermentation", Sci. Rep, 5, pp.15445~ (2015)
- Anandharaj M, "Determining the probiotic potential of cholesterol-reducing Lactobacillus and Weissella strains isolated from gherkins(fermented cucumber)and south Indian fermented koozh", Res. Microbiol, 166, pp.428~439 (2015)
- Lee J-S, "Weissella koreensis sp. nov., isolated from kimchi", Int. J. Syst. Evol. Microbiol, 52, pp.1257~1261 (2002)
- Lee JH, "Draft genome sequence of Weissella koreensis KCTC 3621T", J. Bacteriol, 194, pp.5711~5712 (2012)
- Mun SY, "Characterization of highornithine-producing Weissella koreensis DB1 isolated from kimchi and its application in rice bran fermentation as a starter culture", Foods, 9, pp.1545~ (2020)
- Kim E, "Complete genome sequencing and comparative genomics of three potential probiotic strains, Lacticaseibacillus casei FBL6, Lacticaseibacillus chiayiensis FBL7, and Lacticaseibacillus zeae FBL8", Front. Microbiol, 12, pp.794315~ (2022)
- Kandasamy S, "Probiogenomic in-silico analysis and safety assessment of Lactiplantibacillus plantarum DJF10 strain isolated from Korean raw milk", Int. J. Mol. Sci, 23, pp.14494~ (2022)