Report on 14 unrecorded bacterial species in Korea that belong to the phyla Bacteroidetes and Deinococcus-Thermus
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As a result of the research project ‘Survey and excavation of Korean indigenous species’ to secure unrecorded species in Korea, a total of 14 unreported bacterial strains assigned to the phyla Deinococcus- Thermus and Bacteroidetes were isolated from various environmental habitats all around Korea. On the basis of 16S rRNA gene sequence similarity and affiliation to the clade with the closest species, it was concluded that the isolates represent deep groups of the phyla Deinococcus-Thermus and Bacteroidetes. There have been no records about these 14 unreported species in Korea; therefore 2 species of 2 genera in the class Deinococci within the phylum Deinococcus-Thermus, and 11 species of 9 genera in the class Flavobacteriia and one species in one genus in the class Sphigobacteriia within the phylum Bacteroidetes are described as unreported species found in Korea. Gram staining reaction, morphological and other biochemical characteristics are described in the species description section.
Abstract
As a result of the research project ‘Survey and excavation of Korean indigenous species’ to secure unrecorded species in Korea, a total of 14 unreported bacterial strains assigned to the phyla Deinococcus- Thermus and Bacteroidetes were isolated from various environmental habitats all around Korea. On the basis of 16S rRNA gene sequence similarity and affiliation to the clade with the closest species, it was concluded that the isolates represent deep groups of the phyla Deinococcus-Thermus and Bacteroidetes. There have been no records about these 14 unreported species in Korea; therefore 2 species of 2 genera in the class Deinococci within the phylum Deinococcus-Thermus, and 11 species of 9 genera in the class Flavobacteriia and one species in one genus in the class Sphigobacteriia within the phylum Bacteroidetes are described as unreported species found in Korea. Gram staining reaction, morphological and other biochemical characteristics are described in the species description section.
참고문헌 (25)
- Asker, D., "Deinococcus aquiradiocola sp. nov., isolated from a radioactive site in Japan", Int. J. Syst. Evol. Microbiol, 59, pp.144~149 (2009)
- Fitch, W.M., "Toward defining course of evolution -Minimum change for a specific tree topology", Syst. Zool, 20, pp.406~416 (1971)
- Griffiths, E., "Identification of signature proteins that are distinctive of the Deinococcus-Thermus phylum", International Microbiology: the Official Journal of the Spanish Society for Microbiology, 10, pp.201~208 (2007)
- Johansen, J.E., "Description of Cellulophaga baltica gen. nov., sp. nov. and Cellulophaga fucicola gen. nov., sp. nov. and reclassification of Cytophaga lytica to Cellulophaga lytica gen. nov., comb. nov", Int. J. Syst. Bacteriol, 49(3), pp.1231~1240 (1999)
- Kim, J.J., "Flavobac terium compostarboris sp. nov., isolated from leaf-andbranch compost, and emended descriptions of Flavobacterium hercynium, Flavobacterium resistens and Flavobacterium johnsoniae", Int. J. Syst. Evol. Microbiol, 62, pp.2018~2024 (2012)
- Kim, O.S., "Introducing EzTaxon-e: a prokaryotic 16S rRNA gene sequence database with phylotypes that represent uncultured species", Int. J. Syst. Evol. Microbiol, 62, pp.716~721 (2012)
- Kim, Y.O., "Description of Lutimonas halocynthiae sp. nov., isolated from a golden sea squirt (Halocynthia aurantium), reclassification of Aestuariicola saemankumensis as Lutimonas saemankumensis comb. nov. and emended description of the genus Lutimonas", Int. J. Syst. Evol. Microbiol, 64, pp.1984~1990 (2014)
- Kimura, M., "A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide-sequences", J. Mol. Evol, 16, pp.111~120 (1980)
- Kopel, M., "Draft genome sequence of Nonlabens ulvanivorans, an ulvan-degrading bacterium", Genome announc, 2(4), pp.e00793~ (2014)
- Krieg, N., "The Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacters, Fusobacteria, Dictyoglomi, Gemmatimonadetes, Lentisphaerae, Verrucomicrobia, Chlamydiae, and Planctomycetes" (2010), Springer
- Ludwig, W., "Bergey’s Manual of Systematic Bacteriology", pp.1~19 (2010), Springer
- Luo, X.S., "Pedobacter glucosidilyticus sp nov., isolated from dry riverbed soil", Int. J. Syst. Evol. Microbiol, 60, pp.229~233 (2010)
- Nedashkovskaya, O.I., "Maribacter stanieri sp. nov., a marine bacterium of the family Flavobacteriaceae", Int. J. Syst. Evol. Microbiol, 60, pp.214~218 (2010)
- Nedashkovskaya, O.I., "Flavobacterium ahnfeltiae sp. nov., a new marine polysaccharide-degrading bacterium isolated from a Pacific red alga", Archives of Microbiology, 196, pp.745~752 (2014)
- Nedashkovskaya, O.I., "Zobellia amurskyensis sp. nov., Zobellia laminariae sp. nov. and Zobellia russellii sp. nov., novel marine bacteria of the family Flavobacteriaceae", Int. J. Syst. Evol. Microbiol, 54, pp.1643~1648 (2004)
- Nedashkovskaya, O.I., "Gramella echinicola gen. nov., sp. nov., a novel halophilic bacterium of the family Flavobacteriaceae isolated from the sea urchin Strongylocentrotus intermedius", Int. J. Syst. Evol. Microbiol, 55, pp.391~394 (2005)
- Qin, Q.L., "The complete genome of Zunongwangia profunda SM-A87 reveals its adaptation to the deep-sea environment and ecological role in sedimentary organic nitrogen degradation", BMC Genomics, 11, pp.247~ (2010)
- Rainey, F.A., "Phylogenetic diversity of the deinococci as determined by 16S ribosomal DNA sequence comparison", Int. J. Syst. Bacteriol, 47, pp.510~514 (1997)
- Saitou, N., "The Neighbor-Joining Method - a new method for reconstructing phylogenetic trees", Mol. Biol. Evol, 4, pp.406~425 (1987)
- Srinivasan, S., "Deinococcus humi sp. nov., isolated from soil", Int. J. Syst. Evol. Microbiol, 62, pp.2844~2850 (2012)
- Tamaki, H., "Flavobacterium limicola sp. nov., a psychrophilic, organic-polymerdegrading bacterium isolated from freshwater sediments", Int. J. Syst. Evol. Microbiol, 53, pp.519~526 (2003)
- Tamura, K., "MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods", Mol. Biol. Evol, 28, pp.2731~2739 (2011)
- Thompson, J.D., "The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools", Nucleic Acids Res, 25, pp.4876~4882 (1997)
- Whitman, W.B., "Prokaryotes: the unseen majority", Proceedings of the National Academy of Sciences of the United States of America, 95, pp.6578~6583 (1998)
- Yoon, B.J., "Hyunsoonleella jejuensis gen. nov., sp. nov., a novel member of the family Flavobacteriaceae isolated from seawater", Int. J. Syst. Evol. Microbiol, 60, pp.382~386 (2010)
