본문 바로가기
KERD
논문KCI 등재

A report of 35 unreported bacterial species in Korea, belonging to the phylum Firmicutes

4

조회

0

다운로드

0

인용

0

참고문헌

키워드

주제분류생물학

초록

In an investigation of indigenous prokaryotic species in Korea, a total of 35 bacterial strains assigned to the phylum Firmicutes were isolated from diverse habitats including natural and artificial environments. Based on their high 16S rRNA gene sequence similarity (>98.7%) and formation of robust phylogenetic clades with species of validly published names, the isolates were identified as 35 species belonging to the orders Bacillales (the family Bacillaceae, Paenibacillaceae, Planococcaceae, and Staphylococcaceae) and Lactobacillales (Aerococcaceae, Enterococcaceae, Lactobacillaceae, Leuconostocaceae, and Streptococcaceae). Since these 35 species in Korean environments has not been reported in any official report, we identified them as unrecorded bacterial species and investigated them taxonomically. The newly found unrecorded species belong to 20 species in the order Bacillales and 15 species in the order Lactobacillales. The morphological, cultural, physiological, and biochemical properties of the isolates were examined and the descriptive information of the 35 previously unrecorded species is provided here.

Abstract

In an investigation of indigenous prokaryotic species in Korea, a total of 35 bacterial strains assigned to the phylum Firmicutes were isolated from diverse habitats including natural and artificial environments. Based on their high 16S rRNA gene sequence similarity (>98.7%) and formation of robust phylogenetic clades with species of validly published names, the isolates were identified as 35 species belonging to the orders Bacillales (the family Bacillaceae, Paenibacillaceae, Planococcaceae, and Staphylococcaceae) and Lactobacillales (Aerococcaceae, Enterococcaceae, Lactobacillaceae, Leuconostocaceae, and Streptococcaceae). Since these 35 species in Korean environments has not been reported in any official report, we identified them as unrecorded bacterial species and investigated them taxonomically. The newly found unrecorded species belong to 20 species in the order Bacillales and 15 species in the order Lactobacillales. The morphological, cultural, physiological, and biochemical properties of the isolates were examined and the descriptive information of the 35 previously unrecorded species is provided here.

참고문헌 (10)

  1. Bäckhed, F., "The gut microbiota as an environmental factor that regulates fat storage", Proceedings of the National Academy of Sciences. USA, 10144, pp.15718~15723 (2004)
  2. Gibbons, N, "Proposals concerning the higher taxa of bacteria", International Journal of Systematic and Evolutionary Microbiology, 28, pp.1~6 (1978)
  3. Jeffery, I. B., "An irritable bowel syndrome subtype defined by species-specific alterations in faecal microbiota", Gut, 61, pp.997~1006 (2012)
  4. Jeon, Y. -S., "EzEditor: a versatile sequence alignment editor for both rRNA- and protein-coding genes", International Journal of Systematic and Evolutionary Microbiology, 64, pp.689~691 (2014)
  5. Kumar, S., "MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets", Molecular Biology and Evolution, 33, pp.1870~1874 (2016)
  6. Ley, R. E., "Obesity alters gut microbial ecology", Proceedings of the National Academy of Sciences. USA, 102, pp.11070~11075 (2005)
  7. Rajilić-Stojanović, M., "Global and deep molecular analysis of microbiota signatures in fecal samples from patients with irritable bowel syndrome", Gastroenterology, 141, pp.1792~1801 (2011)
  8. Turnbaugh, P. J., "A core gut microbiome in obese and lean twins", Nature, 457, pp.480~484 (2009)
  9. De Vos, P., "Bergey’s manual of systematic bacteriology: Volume 3: The Firmicutes (Vol. 3)" (2011), Springer Science & Business Media
  10. Yoon, S. -H., "Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies", International Journal of Systematic and Evolutionary Microbiology, 67, pp.1613~1617 (2017)

관련 논문AI추천

Report on 24 unrecorded bacterial species of Korea belonging to the phylum Firmicutes김승범, 성치남, 조장천, 한지혜, CHANG-JUN CHA, Che Ok Jeon, Jin-Woo Bae, JONGSIK CHUN, Jung-Hoon Yoon, KISEONG JOH, Kwang-Yeop Jahng, Tae-Su Kim, Wan-Taek Im, Yochan Joung국립생물자원관 · Journal of Species Research2015 · 제4권 제2호Report on 30 unrecorded bacterial species of the phylum Firmicutes isolated from Korea in 2016김원용, 배진우, 이도훈, 이순동, 이하나, 임완택, 장광엽, 조기성, 차창준, Shamsun Nahar국립생물자원관 · Journal of Species Research2018 · 제7권 제1호A report of 26 unrecorded bacterial species in Korea, belonging to the Bacteroidetes and Firmicutes김승범, 성치남, 임완택, CHANG-JUN CHA, Che Ok Jeon, Haneul Kim, Jung-Hoon Yoon, KISEONG JOH, Kwang-Yeop Jahng국립생물자원관 · Journal of Species Research2016 · 제5권 제1호A report of 43 unrecorded bacterial species within the phyla Bacteroidetes and Firmicutes isolated from various sources from Korea in 2019김명겸, 김승범, 김원용, 성치남, 임완택, 전체옥, 차창준, Hana Yi, Haneul Kim, Heeyoung Kang, Jung-Hoon Yoon, KISEONG JOH국립생물자원관 · Journal of Species Research2021 · 제10권 제2호A report of 10 unrecorded bacterial species of Korea, belonging to the phylum Firmicutes임완택, Chang-Jun Cha, Eun Ji Kim, Hana Yi, Jin-Woo Bae, KISEONG JOH, Kwang-Yeop Jahng, Sungmi Choi국립생물자원관 · Journal of Species Research2016 · 제5권 제2호Report of 20 unrecorded bacterial species in Korea belonging to the phylum Firmicutes during surveys in 2020김승범, 김원용, 박은희, 성치남, 임완택, 조기성, 차창준, Jung-Hoon Yoon국립생물자원관 · Journal of Species Research2021 · 제10권 제3호

이 간행물의 다른 논문 (8건)