본문 바로가기
KERD
논문KCI 등재

A report on 36 unrecorded bacterial species isolated from Korean islands in 2023

2

조회

0

다운로드

0

인용

0

참고문헌

키워드

주제분류생물학

초록

Various samples were collected from Korean islands in order to obtain unrecorded bacterial species in 2023. After aerobically incubating on marine agar and Reasoner’s 2A agar, approximately 1,200 bacterial strains were isolated and identified using 16S rRNA gene sequences. A total of 36 strains showed ≥98.7% sequence similarity to previously published and validated bacterial species. However, these strains have not previously been reported in the Republic of Korea, indicating that they belong to Korean unrecorded bacterial species. The unrecorded bacterial species were assigned to the classes Actinomycetes, Bacilli, Bacteroidia, Flavobacteriia, Sphingobacteriia, Alphaproteobacteria, Betaproteobacteria, and Gammaproteobacteria. The information we obtained by examining the strains includes details of the Gram reactions, colony and cell morphology, biochemical characteristics, and phylogenetic positions of the unrecorded species.

Abstract

Various samples were collected from Korean islands in order to obtain unrecorded bacterial species in 2023. After aerobically incubating on marine agar and Reasoner’s 2A agar, approximately 1,200 bacterial strains were isolated and identified using 16S rRNA gene sequences. A total of 36 strains showed ≥98.7% sequence similarity to previously published and validated bacterial species. However, these strains have not previously been reported in the Republic of Korea, indicating that they belong to Korean unrecorded bacterial species. The unrecorded bacterial species were assigned to the classes Actinomycetes, Bacilli, Bacteroidia, Flavobacteriia, Sphingobacteriia, Alphaproteobacteria, Betaproteobacteria, and Gammaproteobacteria. The information we obtained by examining the strains includes details of the Gram reactions, colony and cell morphology, biochemical characteristics, and phylogenetic positions of the unrecorded species.

참고문헌 (16)

  1. Cho, H., "A report of 20 unrecorded bacterial species isolated from the coastal area of Korean islands in 2022", Journal of Species Research, 12(2), pp.165~173 (2023)
  2. Chun, J., "Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes", International Journal of Systematic and Evolutionary Microbiology, 68(1), pp.461~466 (2018)
  3. Felsenstein, J., "Evolutionary Trees from Gene Frequencies and Quantitative Characters : Finding Maximum Likelihood Estimates", Evolution, 35, pp.1229~1242 (1981)
  4. Felsenstein, J., "Confidence limits on phylogenies : an approach using the bootstrap", Evolution, 39(4), pp.783~791 (1985)
  5. Fernández-Palacios, J.M., "Scientists’ warning-The outstanding biodiversity of islands is in peril", Global Ecology and Conservation, 31, pp.e01847~ (2021)
  6. Li, S., "Island biogeography of soil bacteria and fungi : similar patterns, but different mechanisms", The ISME Journal, 14(7), pp.1886~1896 (2020)
  7. Endemic Species of Korea, "Lim, M.S.", National Institute of Biological Resources, ~ (2012)
  8. "Discovered 150 unrecorded plants in Jeju and islands in the Southwest Sea for 30 years" (2020)[URL]
  9. Rzhetsky, A., "Theoretical foundation of the minimum-evolution method of phylogenetic inference", Molecular Biology and Evolution, 10, pp.1073~1095 (1993)
  10. Saitou, N., "The neighbor-joining method : a new method for reconstructing phylogenetic trees", Molecular Biology and Evolution, 4, pp.406~425 (1987)
  11. Shin, S.Y., "A report of 30 unrecorded bacterial species in Korea, isolated from marine ecosystems in 2021", Journal of Species Research, 11(3), pp.143~154 (2022)
  12. Shin, S., "Two Previously Unrecorded Fungal Species Isolated from Muui Island in Korea", Mycobiology, 51(6), pp.410~416 (2023)
  13. Shin, S.Y., "A report on 10 unrecorded bacterial species isolated from the Korean islands in 2022", Journal of Species Research, 11(spc2), pp.143~154 (2023)
  14. Tamura, K., "MEGA11 : Molecular evolutionary genetics analysis version 11", Molecular Biology and Evolution, 38(7), pp.3022~3027 (2021)
  15. Yang, S.-J., "Gaetbulibacter marinus sp. nov., isolated from coastal seawater, and emended description of the genus Gaetbulibacter", International Journal of Systematic and Evolutionary Microbiology, 58(2), pp.315318~ (2008)
  16. Yoon, S.H., "Introducing EzBioCloud: a taxonomically united database of 16S rRNA gene sequences and whole-genome assemblies", International Journal of Systematic and Evolutionary Microbiology, 67(5), pp.1613~1617 (2017)

관련 논문AI추천

A report on 10 unrecorded bacterial species isolated from the Korean islands in 2022김명겸, 송재호, 신승열, 정지혜, Heeyoung Kang, Hyun-Ju Noh, Yi Hyun Jeon, Yochan Joung국립생물자원관 · Journal of Species Research2023 · 제12권 제4호A report of 20 unrecorded bacterial species isolated from island and coastal ecosystems in 2023김다솜, 송재호, 신승열, 한송이, Heeyoung Kang국립생물자원관 · Journal of Species Research2024 · 제13권 제3호Discovery of 18 previously unrecorded bacterial species in the coastal areas surrounding Korean islands in 2023김민석, 김민정, 조장천, Hyeonuk Sa, Hyerim Cho, Jisoo Han, Yeonjung Lim국립생물자원관 · Journal of Species Research2024 · 제13권 제3호A report of 20 unrecorded bacterial species isolated from the coastal area of Korean islands in 2022김미래, 조장천, Hyerim Cho, Hyunyoung Jo, Sumin Kim, Yeonjung Lim국립생물자원관 · Journal of Species Research2023 · 제12권 제2호A report of 156 unrecorded bacterial species of Republic of Korea belonging to the phyla Acidobacteriota, Deinococcota, Actinomycetota, Bacillota, Bacteroidota, and Pseudomonadota isolated in 2022김명겸, 김승범, 서태근, 전체옥, Chang-Jun Cha, Jung-Hoon Yoon, KISEONG JOH, Wan-Taek Im, Wonyong Kim국립생물자원관 · Journal of Species Research2023 · 제12권 제4호A report of 36 unrecorded bacterial species belonging to the phyla Actinomycetota, Bacillota, Bacteroidota, Deinococcota, and Pseudomonadota isolated in Republic of Korea김명겸, 김승범, 서태근, 전체옥, 조장천, Chang-Jun Cha, Chi-NamSeong, Jin-Woo Bae, Jung-Hoon Yoon, Wan-Taek Im, Wonyong Kim국립생물자원관 · Journal of Species Research2023 · 제12권 제4호

이 간행물의 다른 논문 (9건)