본문 바로가기
KERD
논문KCI 등재

Six newly recorded species of epilithic cyanobacteria isolated in Korea

이남주|이옥민|Hye-Ryeung Wang|Ji-Ho Song|Do-Hyun Kim|So-Won Kim
국립생물자원관 (National Institute of biological resources)|2024.02|Journal of Species Research|제13권 제1호|pp. 10-31|DOI https://doi.org/10.12651/JSR.2024.13.1.010

2

조회

0

다운로드

0

인용

0

참고문헌

키워드

cyanobacteria16S rRNAfreshwaterepilithicpolyphasic
주제분류생물학

초록

In this study, 11 strains of epilithic cyanobacteria belonging to six unrecorded species in Korea were isolated from gravel submerged in freshwater of seven collection sites in Korea. The morphological characteristics of the six species isolated in this study were consistent with the type strain of each species, and the similarity of the 16S rRNA gene sequences with the type strain of each species were 98.8-100%. In the phylogenetic tree using the 16S rRNA gene sequences, the 11 strains of these six species formed the same cluster as the strains of each species. The habitat of each previously reported species is mainly the soil surface, but all Korean strains appeared from the gravel submerged in freshwater. As a result of the morphological, ecological, and molecular analyses, these six species of cyanobacteria were identified as Geminocystis papuanica, Allocoleopsis franciscana, Ancylothrix terrestris, Klisinema persicum, Scytolyngbya timoleontis, and Shackletoniella antarctica, which were added as newly recorded species in Korea.

Abstract

In this study, 11 strains of epilithic cyanobacteria belonging to six unrecorded species in Korea were isolated from gravel submerged in freshwater of seven collection sites in Korea. The morphological characteristics of the six species isolated in this study were consistent with the type strain of each species, and the similarity of the 16S rRNA gene sequences with the type strain of each species were 98.8-100%. In the phylogenetic tree using the 16S rRNA gene sequences, the 11 strains of these six species formed the same cluster as the strains of each species. The habitat of each previously reported species is mainly the soil surface, but all Korean strains appeared from the gravel submerged in freshwater. As a result of the morphological, ecological, and molecular analyses, these six species of cyanobacteria were identified as Geminocystis papuanica, Allocoleopsis franciscana, Ancylothrix terrestris, Klisinema persicum, Scytolyngbya timoleontis, and Shackletoniella antarctica, which were added as newly recorded species in Korea.

참고문헌 (55)

  1. Anagnostidis, K., "Modern approach to the classification system of the cyanophytes 3: Oscillatoriales", Algological Studies, 50(53), pp.327~472 (1988)
  2. Bae, E. H., "New report on cya-nophyte in Korea, Microseira wollei (Farlow ex Gomont) GB McGregor and Sendall ex Kennis (Oscillatoriaceae)", Journal of Species Research, 9(3), pp.210~217 (2020)
  3. Bagchi, S. N., "Phylogenetically distant clade of Nostoc-like taxa with the description of Aliinostoc gen. nov. and Aliinostoc morphoplasticum sp. nov", International Journal of Systematic and Evolutionary Microbiology, 67(9), pp.3329~3338 (2017)
  4. Casamatta, D. A., "Cryptic species in cyanobacterial systematics: a case study of Phormidium retzii (Oscillatoriales) using RAPD molecular markers and 16S rDNA sequence data", Aquatic Botany, 77(4), pp.295~309 (2003)
  5. Dvořák, P., "A new tropical cyanobacterium Pinocchia polymorpha gen. et sp. nov. derived from the genus Pseudanabaena", Fottea, 15(1), pp.113~120 (2015)
  6. Engene, N., "Moorea producens gen. nov., sp. nov. and Moorea bouillonii comb. nov., tropical marine cyanobacteria rich in bioactive secondary metabolites", International Journal of Systematic and Evolutionary Microbiology, 62(5), pp.1171~1178 (2012)
  7. Fernandes, V.M.C., "Coleofasciculaceae, a monophyletic home for the Microcoleus steenstrupii complex and other desiccation-tolerant filamentous cyanobacteria", Journal of Phycology, 57(5), pp.1563~1579 (2021)
  8. "AlgaeBase. World-wide electronic publication" (2023)[URL]
  9. Hall, T.A., "BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95", 98, Nucleic Acids Symposium Series, pp.1999, 41[DOI]
  10. Hašler, P., "Jacksonvillea apiculata (Oscillatoriales, Cyanobacteria) gen. and sp. nov.: a new genus of filamentous, epipsamic cyanobacteria from North Florida", Phycologia, 56(3), pp.284~295 (2017)
  11. Hašler, P., "Morphological and molecular study of epipelic filamentous genera Phormidium, Microcoleus and Geitlerinema (Oscillatoriales, Cyanophyta", Cyanobacteria), 2012, pp.12(2), 341~356
  12. Heidari, F., "New simple trichal cyanobacterial taxa isolated from radioactive thermal springs", Fottea, 18(2), pp.137~149 (2018)
  13. Huelsenbeck, J.P., "MRBAYES : Bayesian inference of phylogenetic trees", Bioinformatics, 17(8), pp.754~755 (2001)
  14. Jaiswal, T.P., "Description of hot spring dwelling Mastigo-cladus ambikapurensis sp. nov., using a polyphasic approach", Plant Systematics and Evolution, 307, pp.1~12 (2021)
  15. Jeong, J.Y., "First isolation report and molecular phylogenetic characteristics of Raphidiop-sis raciborskii in South Korea", The Microbiological Society of Korea, 55(4), pp.350~359 (2019)
  16. Johansen, J.R., "Recognizing cyanobacterial diversity through adoption of a new species paradigm", Algological Studies, 117(1), pp.71~93 (2005)
  17. Kaplan, A., "The languages spoken in the water body (or the biological role of cyanobacterial toxins)", Frontiers in Microbiology, 3, pp.138~ (2012)
  18. Kiel, G., "Bacterial diversity in biofilms on external surfaces of historic buildings in Porto Alegre", World Journal of Microbiology and Biotechnology, 22(3), pp.293~297 (2006)
  19. Kim, D. H., "Three New Plectolyngbya Species (Leptolyngbyaceae, Cyanobacteria) Isolated from Rocks and Saltern of the Republic of Korea", Diversity, 14(12), pp.1013~ (2022)
  20. Kim, M. C., "Towards a taxonomic coherence between average nucleotide identity and 16S rRNA gene sequence similarity for species demarcation of prokaryotes", International Journal of Systematic and Evolutionary Microbiology, 64(2), pp.346~351 (2014)
  21. Kim, S. W., "Five newly recorded species of cyanobacteria in Korea", Journal of Species Research, 11(4), pp.296~309 (2022)
  22. Komárek, J., "A polyphasic approach for the taxonomy of cyanobacteria : principles and applications", European Journal of Phycology, 51(3), pp.346~353 (2016)
  23. Komárek, J., "Taxonomic classification of cyanoprokaryotes (cyanobacterial genera) 2014, using a polyphasic approach", Preslia, 86(4), pp.295~335 (2014)
  24. 1, "Süßwasserflora von Mitteleuropa vol. 19", pp.1998, Komárek, J.
  25. 2, "Süβwasserflora von Mitteleuropa vol. 19", pp.Spektrum, Komárek, J.
  26. Korelusová, J., "Heterogeneity of the cyanobacterial genus Synechocystis and des-cription of a new genus, Geminocystis", Journal of Phycology, 45(4), pp.928~937 (2009)
  27. Kumar, S., "MEGA X : Molecular evolutionary genetics analysis across computing platforms", Molecular Biology and Evolution, 35(6), pp.1547~1549 (2018)
  28. Lee, N. J., "Trichotorquatus salinus sp. nov. (Oculatellaceae, Cyanobacteria) from a Saltern of Gomso, Republic of Korea", Diversity, 15(1), pp.65~ (2023)
  29. Lee, N. J., "A study of newly recorded genus and species for aerial cyanobacteria Wilmottia murrayi (Oscillatoriales, Cyanobacteria) in Korea", Korean Journal of Environmental Biology, 37(3), pp.260~267 (2019)
  30. Lee, O.M., "Newly recorded genera and species, Pantanalinema rosaneae and Alkalinema pantanalense (Leptolyngbyaceae, Cyanobacteria) isolated in Korea", Journal of Species Research, 11(1), pp.10~21 (2022)
  31. Mai, T., "Revision of the Synechococcales (Cyanobacteria) through recognition of four families including Oculatellaceae fam. nov. and Trichocoleaceae fam. nov. and six new genera containing 14 species", Phytotaxa, 365(1), pp.1~59 (2018)
  32. Martins, M. D., "Proposal of Ancylothrix gen. nov., a new genus of Phormidiaceae (Cyanobacteria, Oscillatoriales) based on a polyphasic approach", International Journal of Systematic and Evolutionary Microbiology, 66(6), pp.2396~2405 (2016)
  33. Muhlsteinova, R., "Polyphasic characterization of Trichocoleus desertorum sp. nov. (Pseudanabaenales, Cyanobacteria) from desert soils and phylogenetic placement of the genus Trichocoleus", Phytotaxa, 163(5), pp.241~261 (2014)
  34. "National List of Species of Korea" (2023)[URL]
  35. Neilan, B. A., "rRNA sequences and evolutionary relationships among toxic and nontoxic cyanobacteria of the genus Microcystis", Internatiosnal Journal of Systematic and Evolutionary Microbiology, 47(3), pp.693~697 (1997)
  36. Page, R.D.M., "Tree View: An application to display phylogenetic trees on personal computers", Bioinformatics, 12(4), pp.357~358 (1996)
  37. Radzi, R., "First record of the cyanobacterial genus Wilmottia (Coleofasciculaceae, Oscillatoriales) from the South Orkney Islands (Antarctica)", Algae, 36(2), pp.111~121 (2021)
  38. Rastogi, R.P., "The cyanotoxin-microcystins: current overview", Reviews in Environmental Science and Bio, 2014, pp.13, 215~249
  39. Schaffner, J.H., "The classification of plants. XII", Ohio Journal of Science, 22(5), pp.129~139 (1922)
  40. Sciuto, K., "Detection of the new cosmopolitan genus Thermoleptolyngbya (Cyanobacteria, Leptolyngbyaceae) using the 16S rRNA gene and 16S-23S ITS region", Molecular Phylogenetics and Evolution, 105, pp.15~35 (2016)
  41. Segawa, T., "Biogeography of cryoconite forming cyanobacteria on polar and Asian glaciers", Journal of Biogeography, 44(12), pp.2849~2861 (2017)
  42. Song, G., "Scytolyngbya timoleontis, gen. et sp. nov. (Leptolyngbyaceae, Cyanobacteria) : a novel false branching cyanobacteria from China", Phytotaxa, 224(1), pp.72~84 (2015)
  43. Song, J. H., "Four newly recorded species of plankto-nic cyanobacteria (Oscillatoriales, Cyanobacteria) in Korea", Journal of Species Research, 11(4), pp.321~329 (2022)
  44. Song, M.A., "A study of six newly recorded species of cyanobacteria (Cyanophyceae, Cyanophyta) in Korea", Journal of Species Research, 6(2), pp.154~162 (2017)
  45. Stam, W. T, "A taxonomic study of a number of blue green algal strains (Cyanophyceae) based on morphology, growth and deoxyribonucleic acid homologies", pp.1978
  46. Stam, W. T., "Relationships between a number of filamentous blue-green algal strains (Cyanophyceae) revealed by DNA-DNA hybridization", Algological Studies, 1980, pp.25, 351~374
  47. Stamatakis, A., "RAxML-VI-HPC: maximum likelihoodbased phylogenetic analyses with thousands of taxa and mixed models", Bioinformatics, 22(21), pp.2688~2690 (2006)
  48. Stanier, R. Y., "Purification and properties of unicellular blue-green algae (order Chroococcales)", Bacteriological Reviews, 35(2), pp.171~205 (1971)
  49. Strunecký, O., "An updated classification of cyanobacterial orders and families based on phylogenomic and polyphasic analysis", Journal of Phycology, 59(1), pp.12~51 (2023)
  50. Strunecký, O., "Molecular and morphological criteria for revision of the genus Microcoleus (Oscillatoriales, Cyanobacteria)", Journal of Phycology, 49(6), pp.1167~1180 (2013)
  51. Strunecký, O., "Diversity of cyanobacteria at the Alaska North Slope with description of two new genera: Gibliniella and Shackletoniella", FEMS Microbiology Ecology, 96(3), pp.1~20 (2020)
  52. Tuji, A., "Annamia dubia sp. nov. with a description of a new family, Geminocystaceae fam. nov. (Cyanobacteria)", Fottea, 21(1), pp.100~109 (2021)
  53. West, W., "British Antarctic Expedition 1907-9 vol. I Biology", pp.263~298 (1911), W. Heinemann
  54. Whitton, B.A., "Ecology of cyanobacteria II: their diversity in space and time", pp.1~13 (2012), Springer Science and Business Media
  55. Yim, B. C., "A study of nine unrecorded species of planktonic cyanobacteria (Cyanophyceae, Cyanophyta) in Korea", Korean Journal of Environmental Biology, 36(3), pp.299~307 (2018)

관련 논문AI추천

Five newly recorded species of cyanobacteria in Korea김소원, 이남주, 이옥민, Do-Hyun Kim, Hye-Ryeung Wang, Ji-Ho Song국립생물자원관 · Journal of Species Research2022 · 제11권 제4호Notes on Six Unrecorded Indigenous Species of Filamentous cyanobacteria (Cyanophyceae, Cyanophyta) in Korea방성도, 송미애, 윤성로, 이옥민, 임병철한국환경생물학회 · 환경생물2017 · 제35권 제3호Newly recorded genera and species, Pantanalinema rosaneae and Alkalinema pantanalense (Leptolyngbyaceae, Cyanobacteria) isolated in Korea이옥민국립생물자원관 · Journal of Species Research2022 · 제11권 제1호A study of six newly recorded species of cyanobacteria (Cyanophyceae, Cyanophyta) in Korea송미애, 이옥민국립생물자원관 · Journal of Species Research2017 · 제6권 제2호New records of freshwater and brackish cyanobacteria in Korea: Morphological diagnosis and floristic expansion (2017-2024)김백호, 김용재, 홍현철, 황수옥한국환경생물학회 · 환경생물2025 · 제43권 제3호A Study of Seven Unrecorded Species of Benthic and Subaerophytic Cyanobacteria (Cyanophyceae, Cyanophyta) in Korea김지환, 윤성로, 이남주, 이옥민, 임병철한국환경생물학회 · 환경생물2018 · 제36권 제3호

이 간행물의 다른 논문 (9건)

Selaginella austrotibetica (Selaginellaceae), a new spikemoss from Xizang, ChinaXian Chun Zhang, Meng-Hua Zhang, 강종수, Jie Yang, Aleksandr Petrovich Shalimovpp. 1-9Five new species of genus Hyattella (Dictyoceratida: Spongiidae) from Korea김영아, 이경진pp. 32-40Ontogenetic variation in Chironomus flaviplumus (Diptera, Chironomidae) larvaeJae-won Park, 곽인실, Hyunsu Yoopp. 41-49Freshwater bryozoans of Korea-observations on living colonies and three new records채현숙, 양호진, 길현종, 서지은pp. 50-60A report of six unrecorded bacterial species isolated from soil samples in Korea김다솜, 지원재, 전미진pp. 61-66
원문 보기