First report of seven unrecorded bambusicolous fungi in Korea
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초록
Korean bamboo forests encompass 22,067 hectares and are dominated by Phyllostachys species. These forests serve as vital ecosystems, providing nourishment and habitat for diverse flora, fauna, and microorganisms. Among these inhabitants, various fungal species have been documented worldwide, displaying ecological roles as saprobes, parasites, and symbionts within or outside the bamboo host. However, a comprehensive study of bambusicolous fungi within the Korean bamboo ecosystem remains a critical gap in our knowledge. In this study, we conducted an extensive survey of bamboo materials collected from various bamboo forests and subsequently undertook fungal isolation. Primary identification of bambusicolous fungi was achieved through analysis of the internal transcribed spacer (ITS) region. As a result, we identified seven previously unrecorded bambusicolous fungal species (Fusarium bambusarum, Fusicolla violacea, Macroconia gigas, Neopestalotiopsis camelliae-oleiferae, Neopestalotiopsis iberica, Neopestalotiopsis longiappendiculata, and Thyridium punctulatum). Phylogenetic analysis using protein-coding genes appropriate for each taxon and morphological observation were conducted to ensure accurate identification. This study contributes to our understanding of fungal diversity within bamboo forests in Korea.
Abstract
Korean bamboo forests encompass 22,067 hectares and are dominated by Phyllostachys species. These forests serve as vital ecosystems, providing nourishment and habitat for diverse flora, fauna, and microorganisms. Among these inhabitants, various fungal species have been documented worldwide, displaying ecological roles as saprobes, parasites, and symbionts within or outside the bamboo host. However, a comprehensive study of bambusicolous fungi within the Korean bamboo ecosystem remains a critical gap in our knowledge. In this study, we conducted an extensive survey of bamboo materials collected from various bamboo forests and subsequently undertook fungal isolation. Primary identification of bambusicolous fungi was achieved through analysis of the internal transcribed spacer (ITS) region. As a result, we identified seven previously unrecorded bambusicolous fungal species (Fusarium bambusarum, Fusicolla violacea, Macroconia gigas, Neopestalotiopsis camelliae-oleiferae, Neopestalotiopsis iberica, Neopestalotiopsis longiappendiculata, and Thyridium punctulatum). Phylogenetic analysis using protein-coding genes appropriate for each taxon and morphological observation were conducted to ensure accurate identification. This study contributes to our understanding of fungal diversity within bamboo forests in Korea.
참고문헌 (48)
- Alexopoulos, C. J., "Intro-ductory mycology" (1996), John Wiley and Sons
- Berbee, M.L., "Two ascomycete classes based on fruiting-body characters and ribosomal DNA sequence", Molecular Biology and Evolution, 9, pp.278~284 (1992)
- Carbone, I., "A method for designing primer sets for speciation studies in filamentous ascomycetes", Mycologia, 91, pp.553~556 (1999)
- Color, M., "Munsell soil-color charts: with genuine Mun-sell color chips" (2021), Munsell Color
- Dai, D. -Q., "Bamboo: Current and Future Prospects", pp.165~ (2018)
- Deng, Y., "Different Geographic Strains of Dinoflagellate Karlodinium veneficum Host Highly Diverse Fungal Community and Potentially Serve as Possible Niche for Colonization of Fungal Endophytes", International Journal of Molecular Sciences, 24, pp.1672~ (2023)
- Dey, S., "Genetics, Genomics and Breeding of Bamboos", pp.256~278 (2023), CRC Press
- Diogo, E., "Five new species of Neopestalotiopsis associated with diseased Eucalyptus spp. in Portugal", Mycological Progress, 20, pp.1441~1456 (2021)
- Forin, N., "Illuminating type collections of nectriaceous fungi in Saccardo’s fungarium", Persoonia-Molecular Phylogeny and Evolution of Fungi, 45, pp.221~249 (2020)
- Gardes, M., "ITS primers with enhanced specificity for basidiomycetes-application to the identification of mycorrhizae and rusts", Molecular Ecology, 2, pp.113~118 (1993)
- Gerlach, W., "Drei neue Varietäten von Fusarium merismoides, F. larvarum und F. chlamydosporum", Phytopathologische Zeitschrift, 90 (1977)
- Glass, N.L., "Development of primer sets designed for use with the PCR to amplify conserved genes from filamentous ascomycetes", Applied and Environmental Microbiology, 61, pp.1323~1330 (1995)
- Gräfenhan, T., "An overview of the taxonomy, phylogeny, and typification of nectriaceous fungi in Cosmospora, Acremonium, Fusarium, Stilbella, and Volutella", Studies in Mycology, 68, pp.79~113 (2011)
- Halecker, S., "Hymenosetin, a 3-decalinoyltetramic acid antibiotic from cultures of the ash dieback pathogen, Hymenoscyphus pseudoalbidus", Phytochemistry, 100, pp.86~91 (2014)
- Hino, I., "Illustrations of Bamboo-inhabiting fungi", Bull Miyazaki Coll Agric For, pp.55~64 (1938)
- Hong, J. -H., "Investigation of marine-derived fungal diversity and their exploitable biological activities", Marine Drugs, 13, pp.4137~4155 (2015)
- Hyde, K., "Bambusicolous fungi: a review", Fungal Diversity (2002)
- Katoh, K., "MAFFT multiple sequence alignment software version 7: improvements in performance and usability", Molecular Biology and Evolution, 30, pp.772~780 (2013)
- Kellogg, E.A., "Flowering Plants. Monocots" (2016), Springer
- Khalil, H.A., "Bamboo: Current and Future Prospects" (2018), BoD - Books on Demand
- Kwon, H., "Chemical constituents from Neopestalotiopsis clavispora culture medium with estrogenic effects in MCF-7 cells", Phytochemistry Letters, 52, pp.134~137 (2022)
- Li, L., "Morphology, phylogeny, and pathogenicity of pestalotioid species on Camellia oleifera in China", Journal of Fungi, 7, pp.1080~ (2021)
- Li, W., "Antifungal activity and biocontrol mechanism of Fusicolla violacea J-1 against soft rot in kiwifruit caused by Alternaria alternata", Journal of Fungi, 7, pp.937~ (2021)
- Liu, Y. J., "Phylogenetic rela-tionships among ascomycetes : evidence from an RNA polymerse II subunit", Molecular Biology and Evolution, 16, pp.1799~1808 (1999)
- World bamboo resources: a thematic study prepared in the framework of the global forest resources assessment 2005, "Lobovikov, M.", Food & Agriculture Org, ~ (2005)
- Lundqvist, N., "Nordic Sordariaceae s. lat. Acta Universitas Upsaliensis, Symbolae Botanicae Uppsalienses" (1972), Acta Universitatis Upsaliensis Uppsala
- Luo, J., "Two new species of Cosmospora (Nectriaceae, Hypocreales) from China", Fungal Diversity, 31, pp.83~93 (2008)
- Maharachchikumbura, S. S., "Pestalotiopsis-morphology, phylogeny, biochemistry and diversity", Fungal Diversity, 50, pp.167~187 (2011)
- Maharachchikumbura, S. S., "Pestalotiopsis revisited", Studies in Mycology, 79, pp.121~186 (2014)
- Miller, M. A., "Creating the CIPRES Science Gateway for inference of large phylogenetic trees", 2010 gateway computing environments workshop (GCE) (2010), Ieee
- O’Donnell, K., "Two divergent intra-genomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous", Molecular Phylogenetics and Evolution, 7, pp.103~116 (1997)
- O’Donnell, K., "Mole-cular systematics and phylogeography of the Gibberella fujikuroi species complex", Mycologia, 90, pp.465~493 (1998)
- O’Donnell, K., "Multiple evolutionary origins of the fungus causing Panama disease of banana: concordant evidence from nuclear and mitochondrial gene genealogies", Proceedings of the National Academy of Sciences, 95, pp.2044~2049 (1998)
- Paudyal, K., "Ecosystem services from bamboo forests: key findings, lessons learnt and call for actions from global synthesis" (2022), International Center for Bamboo and Rattan
- Rehner, S.A., "A Beauveria phylogeny inferred from nuclear ITS and EF1-α sequences: evidence for cryptic diversification and links to Cordyceps teleomorphs", Mycologia, 97, pp.84~98 (2005)
- Samuels, G.J., "Systematics and Evolution: Part A", pp.221~255 (2001), Springer
- Soreng, R. J., "A worldwide phylogenetic classification of the Poaceae (Gramineae) II: An update and a comparison of two 2015 classifications", Journal of Systematics and Evolution, 55, pp.259~290 (2017)
- Stamatakis, A., "RAxML version 8 : a tool for phylo-genetic analysis and post-analysis of large phylogenies", Bioinformatics, 30, pp.1312~1313 (2014)
- Sugita, R., "Thyridium revised : Synonymisation of Phialemoniopsis under Thyridium and establishment of a new order, Thyridiales", MycoKeys, 86, pp.147~ (2022)
- Sung, G. -H., "A multi-gene phylogeny of Clavicipitaceae (Ascomycota, Fungi): Identification of localized incongruence using a combinational bootstrap approach", Molecular Phylogenetics and Evolution, 44, pp.1204~1223 (2007)
- Wang, M., "Fusarium and allied genera from China: species diversity and distribution", Persoonia-Molecular Phylogeny and Evolution of Fungi, 48, pp.1~53 (2022)
- Wang, Q. T., "Neopestalotiopsis longiappendiculata as the agent of grey blight disease of Camellia spp", Journal of Phytopathology, 170, pp.770~777 (2022)
- White, T. J., "PCR Protocols: a Guide to Methods and Applications 18", pp.315~322 (1990)
- Yoo, B. -O., "Application of inventory construction for GIS-based bamboo resource assessment", Journal of the Korean Association of Geographic Information Studies, 20, pp.77~88 (2017)
- Yuen, J. Q., "Carbon stocks in bamboo ecosystems worldwide : Estimates and uncertainties", Forest Ecology and Management, 393, pp.113~138 (2017)
- Zeng, Z. -Q., "Three New Species of Fusicolla (Hypocreales) from China", Journal of Fungi, 9, pp.572~ (2023)
- Zhang, N., "Systematics and Evolution: Part B", pp.57~88 (2015)
- Zhao, S., "Four new tetramic acid and one new furanone derivatives from the plant endophytic fungus Neopestalotiopsis sp", Fitoterapia, 103, pp.106~112 (2015)