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A Systematic Review of Trends for Image Quality Improvement in Light Microscopy

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초록

Image noise reduction algorithm performs important functions in light microscopy. This study aims to systematically review the research trend of types and performance evaluation methods of noise reduction algorithm in light microscopic images. A systematic literature search of three databases of publications from January 1985 to May 2020 was conducted; of the 139 publications reviewed, 16 were included in this study. For each research result, the subjects were categorized into four major frameworks—1. noise reduction method, 2. imaging technique, 3. imaging type, and 4. evaluation method—and analyzed. Since 2003, related studies have been conducted and published, and the number of papers has increased over the years and begun to decrease since 2016. The most commonly used method of noise reduction algorithm for light microscopy images was wavelet-transform-based technology, which was mostly applied in basic systems. In addition, research on the real experimental image was performed more actively than on the simulation condition, with the main case being to use the comparison parameter as an evaluation method. This systematic review is expected to be extremely useful in the future method of numerically analyzing the noise reduction efficiency of light microscopy images.

Abstract

Image noise reduction algorithm performs important functions in light microscopy. This study aims to systematically review the research trend of types and performance evaluation methods of noise reduction algorithm in light microscopic images. A systematic literature search of three databases of publications from January 1985 to May 2020 was conducted; of the 139 publications reviewed, 16 were included in this study. For each research result, the subjects were categorized into four major frameworks—1. noise reduction method, 2. imaging technique, 3. imaging type, and 4. evaluation method—and analyzed. Since 2003, related studies have been conducted and published, and the number of papers has increased over the years and begun to decrease since 2016. The most commonly used method of noise reduction algorithm for light microscopy images was wavelet-transform-based technology, which was mostly applied in basic systems. In addition, research on the real experimental image was performed more actively than on the simulation condition, with the main case being to use the comparison parameter as an evaluation method. This systematic review is expected to be extremely useful in the future method of numerically analyzing the noise reduction efficiency of light microscopy images.

참고문헌 (36)

  1. Davidson MW, "Pioneers in optics : Zacharias Janssen and Johannes Kepler", Microscopy Today, 17, pp.44~46 (2009)
  2. Davidson MW, "Robert Hooke", Labmedicine, 41, pp.180~182 (2010)
  3. Wimmer W., "Carl Zeiss, Ernst Abbe, and advances in the light microscope", Microscopy Today, 25, pp.50~54 (2017)
  4. Huang B, "Breaking the diffraction barrier : Super-resolution imaging of cells", Cell, 143, pp.1047~1058 (2010)
  5. Dedecker P, "Left diffraction-unlimited optical microscopy", Materialstoday, 11, pp.12~21 (2008)
  6. Adhikari S, "Single-molecule localization microscopy and tracking with red-shifted states of conventional BODIPY conjugates in living cells", Nature Communications, 10 (2019)[DOI]
  7. Moerner WE, "Optical detection and spectroscopy of single molecules in a solid", Physics Review Letters, 62, pp.2535~2538 (1989)
  8. Moerner WE, "Illuminating single molecules in condensed matter", Science, 283, pp.1670~1676 (1999)
  9. Meiniel W, "Denoising of microscopy images : A review of the state-of-the-art, and a new sparsity-based method", IEEE Transactions on Image Processing, 27, pp.3842~3856 (2018)
  10. Chambolle A, "An algorithm for total variation minimization and applications", Journal of Mathematical Imaging and Vision, 20, pp.89~97 (2004)
  11. Buades A, "A review of image denoising algorithms, with a new one", Multiscale Modeling & Simulation, 4, pp.490~530 (2005)
  12. Dautov CP, "Introduction to Wavelets and their applications in signal denoising", Bitlis Eren University Journal of Science and Technology, 8, pp.1~10 (2018)
  13. Srivastava M, "A new wavelet denoising method for selecting decomposition levels and noise thresholds", IEEE Access, 4, pp.3862~3877 (2016)
  14. Wahab MF, "Wavelet transforms in separation science for denoising and peak overlap detection", Journal of Separation Science, 43, pp.1998~2010 (2020)
  15. Zhang M, "Improved double-threshold denoising method based on the wavelet transform", OSA Continuum, 2, pp.2328~2342 (2019)
  16. Nowak RD, "Wavelet-based rician noise removal for magnetic resonance imaging", IEEE Transactions on Image Processing, 8, pp.1408~1419 (1999)
  17. Zhang Y, "Improved wavelet threshold for image de-noising", Frontiers in Neuroscience, 13 (2019)[DOI]
  18. Donoho DL, "De-noising by soft-thresholding", IEEE Transactions on Information Theory, 41, pp.613~627 (1995)
  19. AlAsadi AHH, "Contourlet transform based method for medical image denoising", Journal of AL-Qadisiyah for Computer Science and Mathematics, 7, pp.1~7 (2015)
  20. Moher D, "Preferred reporting items for systematic reviews and meta-analyses : The PRISMA statement", BMJ, 339, pp.332~336 (2009)
  21. Wang XH, "Microarray image enhancement by denoising using stationary wavelet transform", IEEE Transactions on Nanobioscience, 2, pp.184~189 (2003)
  22. Gopalappa C, "Removal of hybridization and scanning noise from microarrays", IEEE Transactions on Nanobioscience, 8, pp.210~218 (2009)
  23. Van't Hoff M, "Screening by imaging : Scaling up single-DNA-molecule analysis with a novel parabolic VA-TIRF reflector and noise-reduction techniques", Physical Chemistry Chemical Physics, 11, pp.7713~7720 (2009)
  24. Boulanger J, "Patch-based nonlocal functional for denoising fluorescence microscopy image sequences", IEEE Transactions on Medical Imaging, 29, pp.442~454 (2010)
  25. Howlader T, "Noise reduction of cDNA microarray images using complex wavelets", IEEE Transactions on Image Processing, 19, pp.1953~1967 (2010)
  26. Luisier F, "Image denoising in mixed poisson–gaussian noise", IEEE Transactions on Image Processing, 20, pp.696~708 (2011)
  27. Chang CW, "Total variation versus wavelet-based methods for image denoising in fluorescence lifetime imaging microscopy", Journal of Biophotonics, 249, pp.449~457 (2013)
  28. Das DK, "Quantitative microscopy approach for shape-based erythrocytes characterization in anaemia", Journal of Microscopy, 249, pp.136~149 (2013)
  29. Giryes R, "Sparsity based poisson denoising with dictionary learning", IEEE Transactions on Image Processing, 23, pp.5057~5069 (2014)
  30. Lanza A, "Image restoration with Poisson–Gaussian mixed noise", Computer Methods in Biomechanics and Biomedical Engineering: Imaging & Visualization, 2, pp.12~24 (2014)
  31. Yoon JW, "Statistical denoising scheme for single molecule fluorescence microscopic images", Biomedical Signal Processing and Control, 10, pp.11~20 (2014)
  32. Bernas T, "Application of detector precision characteristics for the denoising of biological micrographs in the wavelet domain", Biomedical Signal Processing and Control, 19, pp.1~28 (2015)
  33. Yang S, "Poisson-Gaussian noise reduction using the hidden markov model in contourlet domain for fluorescence microscopy images", PLoS One, 10 (2015)[DOI]
  34. Bai C, "Compressed blind deconvolution and denoising for complementary beam subtraction light-sheet fluorescence microscopy", IEEE Transactions on Biomedical Engineering, 66, pp.2979~2989 (2019)
  35. Xiao C, "Simultaneous recovery of both bright and dim structures from noisy fluorescence microscopy images using a modified TV constraint", Journal of Microscopy, 275, pp.24~35 (2019)
  36. Kim JY, "Preliminary study of improved median filter using adaptively mask size in light microscopic image", Microscopy, 69, pp.31~36 (2020)

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