A Comparative Study of (1H-Indol-3-yl)methylene Rhodanine Analogs as Potent PIM Kinase Inhibitors
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This study explored the inhibitory efficacy of (1H-indol-3-yl)methylene rhodanine derivatives against PIM kinases, in comparison with established benzylidene rhodanine analogs. The introduction of a hydroxyl group improved inhibition of PIM-1 and -3 kinases, underscoring the importance of specific hydrogen bond interactions. This investigation shifted focus to the design of (1H-indol-3-yl)methylene analogs, aiming to introduce an extra hydrogen bond interaction with a key active-site residue. Computational modeling revealed consistent binding modes, characterized by ionic and hydrogen bonding interactions with active-site residues, supported by the crucial role of the rhodanine’s imide functionality. The orientation of the pyrazine ring was influenced by scaffold structure, impacting the positioning of the amino group relative to optimal orientation for kinase interaction. These synthesized compounds, characterized by (1H-indol-3-yl) methylene rhodanine, exhibited potent pan PIM kinase inhibitory potential, akin to benzylidene rhodanine analogs. This insight contributes to understanding the correlation between structural variations and inhibitory efficacy.
Abstract
This study explored the inhibitory efficacy of (1H-indol-3-yl)methylene rhodanine derivatives against PIM kinases, in comparison with established benzylidene rhodanine analogs. The introduction of a hydroxyl group improved inhibition of PIM-1 and -3 kinases, underscoring the importance of specific hydrogen bond interactions. This investigation shifted focus to the design of (1H-indol-3-yl)methylene analogs, aiming to introduce an extra hydrogen bond interaction with a key active-site residue. Computational modeling revealed consistent binding modes, characterized by ionic and hydrogen bonding interactions with active-site residues, supported by the crucial role of the rhodanine’s imide functionality. The orientation of the pyrazine ring was influenced by scaffold structure, impacting the positioning of the amino group relative to optimal orientation for kinase interaction. These synthesized compounds, characterized by (1H-indol-3-yl) methylene rhodanine, exhibited potent pan PIM kinase inhibitory potential, akin to benzylidene rhodanine analogs. This insight contributes to understanding the correlation between structural variations and inhibitory efficacy.
참고문헌 (11)
- Bellon M, "Targeting Pim kinases in hematological cancers : molecular and clinical review", Mol Cancer, 22, pp.18~ (2023)
- Bullock AN, "Crystal structure of the PIM2 kinase in complex with an organoruthenium inhibitor", PLoS One, 4, pp.e7112~ (2009)
- Li YY, "Pathophysiological roles of Pim-3 kinase in pancreatic cancer development and progression", World J Gastroenterol, 20, pp.9392~9404 (2014)
- Martín-Sánchez E, "PIM kinases as potential therapeutic targets in a subset of peripheral T cell lymphoma cases", PLoS One, 9, pp.e112148~ (2014)
- Asati V, "PIM kinase inhibitors : Structural and pharmacological perspectives", Eur J Med Chem, 172, pp.95~108 (2019)
- Mazzacurati L, "The pan-PIM inhibitor INCB053914displays potent synergy in combination with ruxolitinib in models of MPN", Blood Adv, 3, pp.3503~3514 (2019)
- Yun Y, "2-Thioxothiazolidin-4-one analogs as Pan-PIM kinase inhibitors", Chem Pharm Bull(Tokyo), 69, pp.854~861 (2021)
- Lee J, "Synthesis and evaluation of 5-(3-(pyrazin-2-yl)benzylidene)thiazolidine-2, 4-dione derivatives as panpim kinases inhibitors", Chem Pharm Bull(Tokyo), 62, pp.906~914 (2014)
- Trott O, "AutoDock Vina : improving the speed and accuracy of docking with a new scoring function, efficient optimization, and multithreading", J Comput Chem, 31, pp.455~461 (2010)
- Sanner MF, "Python : a programming language for software integration and development", J Mol Graph Model, 17, pp.57~61 (1999)
- Good AC, "Implications of promiscuous Pim-1 kinase fragment inhibitor hydrophobic interactions for fragment-based drug design", J Med Chem, 55, pp.2641~2648 (2012)
