Information Technology Infrastructure for Agriculture Genotyping Studies
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초록
In efforts to increase its agricultural productivity, the Indonesian Center for Agricultural Biotechnology andGenetic Resources Research and Development has conducted a variety of genomic studies using highthroughputDNA genotyping and sequencing. The large quantity of data (big data) produced by thesebiotechnologies require high performance data management system to store, backup, and secure data. Additionally, these genetic studies are computationally demanding, requiring high performance processorsand memory for data processing and analysis. Reliable network connectivity with large bandwidth to transferdata is essential as well as database applications and statistical tools that include cleaning, quality control,querying based on specific criteria, and exporting to various formats that are important for generating highyield varieties of crops and improving future agricultural strategies. This manuscript presents a reliable, secure,and scalable information technology infrastructure tailored to Indonesian agriculture genotyping studies.
Abstract
In efforts to increase its agricultural productivity, the Indonesian Center for Agricultural Biotechnology andGenetic Resources Research and Development has conducted a variety of genomic studies using highthroughputDNA genotyping and sequencing. The large quantity of data (big data) produced by thesebiotechnologies require high performance data management system to store, backup, and secure data. Additionally, these genetic studies are computationally demanding, requiring high performance processorsand memory for data processing and analysis. Reliable network connectivity with large bandwidth to transferdata is essential as well as database applications and statistical tools that include cleaning, quality control,querying based on specific criteria, and exporting to various formats that are important for generating highyield varieties of crops and improving future agricultural strategies. This manuscript presents a reliable, secure,and scalable information technology infrastructure tailored to Indonesian agriculture genotyping studies.
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